STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
Hoch_5104PFAM: protein of unknown function DUF583; KEGG: scl:sce0447 hypothetical protein. (199 aa)    
Predicted Functional Partners:
pyrE
Orotate phosphoribosyltransferase; Catalyzes the transfer of a ribosyl phosphate group from 5- phosphoribose 1-diphosphate to orotate, leading to the formation of orotidine monophosphate (OMP).
       0.790
Hoch_5106
KEGG: scl:sce7986 hypothetical protein.
       0.782
Hoch_5102
PFAM: Serine/threonine protein kinase-related; tyrosine protein kinase; SMART: serine/threonine protein kinase; tyrosine protein kinase; KEGG: scl:sce5842 protein kinase.
       0.732
Hoch_5103
PFAM: Tetratricopeptide TPR_2 repeat protein; KEGG: mxa:MXAN_1263 hypothetical protein.
       0.732
Hoch_4227
FHA domain containing protein; PFAM: Forkhead-associated protein; SMART: Forkhead-associated protein; KEGG: mxa:MXAN_2001 FHA domain-containing protein.
  
     0.448
Hoch_0258
PFAM: TPR repeat-containing protein; SMART: Tetratricopeptide repeat; KEGG: mxa:MXAN_5766 TPR domain-containing protein.
  
     0.429
Hoch_4871
KEGG: mxa:MXAN_3111 hypothetical protein.
  
     0.421
Hoch_3218
KEGG: scl:sce5961 hypothetical protein.
  
     0.418
Hoch_5443
PFAM: TPR repeat-containing protein; Tetratricopeptide TPR_4; SMART: Tetratricopeptide repeat; KEGG: afw:Anae109_3372 TPR repeat-containing protein.
 
     0.415
Hoch_5101
PFAM: Serine/threonine protein kinase-related; tyrosine protein kinase; PEGA domain protein; SMART: serine/threonine protein kinase; tyrosine protein kinase; KEGG: ade:Adeh_3649 serine/threonine protein kinase.
       0.414
Your Current Organism:
Haliangium ochraceum
NCBI taxonomy Id: 502025
Other names: H. ochraceum DSM 14365, Haliangium ochraceum DSM 14365, Haliangium ochraceum SMP-2, Haliangium ochraceum str. DSM 14365, Haliangium ochraceum strain DSM 14365, myxobacterium SMP-2
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.