STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
Hoch_5320KEGG: spl:Spea_2450 hypothetical protein. (332 aa)    
Predicted Functional Partners:
Hoch_3309
PFAM: TonB-dependent receptor; TonB-dependent receptor plug; KEGG: shl:Shal_2727 TonB-dependent receptor.
  
     0.756
Hoch_4293
PFAM: TonB-dependent receptor plug; KEGG: shl:Shal_2727 TonB-dependent receptor.
  
     0.755
Hoch_5429
PFAM: TonB-dependent receptor; TonB-dependent receptor plug; KEGG: xcv:XCV3685 TonB-dependent outer membrane receptor.
  
     0.723
Hoch_2599
KEGG: amc:MADE_00710 hypothetical protein.
  
     0.667
Hoch_6222
PFAM: TonB-dependent receptor; TonB-dependent receptor plug; KEGG: pat:Patl_2865 TonB-dependent receptor.
  
     0.662
Hoch_5484
Peptidase S46; Catalyzes the removal of dipeptides from the N-terminus of oligopeptides.
  
    0.641
Hoch_6103
KEGG: xop:PXO_01865 peptidyl-prolyl cis-trans isomerase.
  
     0.630
Hoch_6422
PFAM: peptidase M2 peptidyl-dipeptidase A; KEGG: slo:Shew_2053 peptidyl-dipeptidase A.
  
     0.630
Hoch_5176
PFAM: amidohydrolase; Amidohydrolase 3; KEGG: cps:CPS_0535 amidohydrolase family protein.
  
    0.604
Hoch_5697
KEGG: sde:Sde_3552 putative lipoprotein.
  
     0.602
Your Current Organism:
Haliangium ochraceum
NCBI taxonomy Id: 502025
Other names: H. ochraceum DSM 14365, Haliangium ochraceum DSM 14365, Haliangium ochraceum SMP-2, Haliangium ochraceum str. DSM 14365, Haliangium ochraceum strain DSM 14365, myxobacterium SMP-2
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.