STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
Hoch_5403PFAM: peptidase U61 LD-carboxypeptidase A; KEGG: acp:A2cp1_3542 peptidase U61 LD- carboxypeptidase A. (285 aa)    
Predicted Functional Partners:
Hoch_2202
KEGG: ank:AnaeK_3864 D-alanyl-D-alanine carboxypeptidase/D-alanyl-D-alanine-endopeptidase; TIGRFAM: D-alanyl-D-alanine carboxypeptidase/D- alanyl-D-alanine-endopeptidase; PFAM: peptidase S13 D-Ala-D-Ala carboxypeptidase C.
 
  
 0.820
Hoch_5402
PFAM: SNARE associated Golgi protein; KEGG: mxa:MXAN_6458 DedA family protein.
 
    0.724
Hoch_0439
PFAM: beta-lactamase; KEGG: dal:Dalk_3805 beta-lactamase.
 
     0.654
Hoch_3907
PFAM: peptidase S13 D-Ala-D-Ala carboxypeptidase C; KEGG: ade:Adeh_3807 D-alanyl-D-alanine carboxypeptidase/D-alanyl-D-alanine-endopeptidase.
 
   
 0.585
Hoch_3381
N-acetylmuramyl-L-alanine amidase, negative regulator of AmpC, AmpD; PFAM: N-acetylmuramoyl-L-alanine amidase family 2; SMART: N-acetylmuramoyl-L-alanine amidase family 2; KEGG: bph:Bphy_5198 hypothetical protein.
     
 0.550
Hoch_5929
Penicillin-binding protein 2; KEGG: scl:sce2411 peptidoglycan glycosyltransferase; TIGRFAM: penicillin-binding protein 2; PFAM: penicillin-binding protein transpeptidase; Penicillin-binding protein dimerisation domain.
    
 0.545
Hoch_3178
PFAM: glycoside hydrolase family 3 domain protein; KEGG: scl:sce4292 put. Beta-glucosidase.
 
   
 0.521
Hoch_3717
PFAM: conserved hypothetical protein; KEGG: ade:Adeh_2411 hypothetical protein.
  
     0.509
Hoch_5719
PFAM: Mandelate racemase/muconate lactonizing protein; KEGG: scl:sce3014 putative O-succinylbenzoate synthase.
 
  
 0.501
Hoch_5404
KEGG: scl:sce7422 hypothetical protein.
       0.484
Your Current Organism:
Haliangium ochraceum
NCBI taxonomy Id: 502025
Other names: H. ochraceum DSM 14365, Haliangium ochraceum DSM 14365, Haliangium ochraceum SMP-2, Haliangium ochraceum str. DSM 14365, Haliangium ochraceum strain DSM 14365, myxobacterium SMP-2
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