STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
Hoch_5435KEGG: scl:sce7618 hypothetical protein. (246 aa)    
Predicted Functional Partners:
Hoch_2615
Hypothetical protein; KEGG: scl:sce9211 general secretion pathway protein K.
  
    0.796
Hoch_4573
PFAM: Tetratricopeptide TPR_2 repeat protein; TPR repeat-containing protein; SMART: Tetratricopeptide repeat; KEGG: scl:sce2921 TPR repeat-containing protein.
 
     0.781
Hoch_3227
KEGG: scl:sce9166 hypothetical protein.
  
     0.774
Hoch_5858
PFAM: PBS lyase HEAT domain protein repeat- containing protein; KEGG: scl:sce6075 hypothetical protein.
  
     0.774
Hoch_3816
PFAM: TPR repeat-containing protein; Tetratricopeptide TPR_2 repeat protein; SMART: Tetratricopeptide repeat; KEGG: scl:sce0252 hypothetical protein.
  
     0.773
Hoch_5246
Hypothetical protein; KEGG: scl:sce2894 putative secreted protein.
  
     0.771
Hoch_0069
PFAM: metallophosphoesterase; SMART: serine/threonine-specific protein phosphatase and bis(5-nucleosyl)-tetraphosphatase; KEGG: scl:sce7747 putative protein phosphatase.
  
     0.770
Hoch_6763
KEGG: scl:sce4357 hypothetical protein.
  
     0.769
Hoch_3264
Hypothetical protein; KEGG: scl:sce5906 putative exported glycine/glutamine-rich protein.
  
     0.765
Hoch_5968
PFAM: protein of unknown function DUF1552; KEGG: scl:sce4602 signal peptide prediction.
  
     0.760
Your Current Organism:
Haliangium ochraceum
NCBI taxonomy Id: 502025
Other names: H. ochraceum DSM 14365, Haliangium ochraceum DSM 14365, Haliangium ochraceum SMP-2, Haliangium ochraceum str. DSM 14365, Haliangium ochraceum strain DSM 14365, myxobacterium SMP-2
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.