STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
Hoch_5541PFAM: Appr-1-p processing domain protein; SMART: Appr-1-p processing domain protein; KEGG: glo:Glov_2198 Appr-1-p processing domain protein. (357 aa)    
Predicted Functional Partners:
Hoch_1318
TIGRFAM: CRISPR-associated RAMP protein, Cmr1 family; PFAM: protein of unknown function DUF324; KEGG: tgr:Tgr7_1790 CRISPR-associated RAMP protein, Cmr1 family.
 
     0.435
Hoch_1317
TIGRFAM: CRISPR-associated protein, Crm2 family; KEGG: tgr:Tgr7_1791 CRISPR-associated protein, Crm2 family.
 
     0.433
Hoch_1315
TIGRFAM: CRISPR-associated RAMP protein, Cmr4 family; PFAM: protein of unknown function DUF324; KEGG: tgr:Tgr7_1793 CRISPR-associated RAMP protein, Cmr4 family.
  
     0.427
Hoch_1313
TIGRFAM: CRISPR-associated RAMP protein, Cmr6 family; PFAM: protein of unknown function DUF324; KEGG: tgr:Tgr7_1795 CRISPR-associated RAMP protein, Cmr6 family.
  
     0.415
Hoch_5542
PFAM: peptidase M48 Ste24p; KEGG: gbm:Gbem_0568 peptidase M48 Ste24p.
       0.403
Your Current Organism:
Haliangium ochraceum
NCBI taxonomy Id: 502025
Other names: H. ochraceum DSM 14365, Haliangium ochraceum DSM 14365, Haliangium ochraceum SMP-2, Haliangium ochraceum str. DSM 14365, Haliangium ochraceum strain DSM 14365, myxobacterium SMP-2
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.