STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
Hoch_5577TIGRFAM: cysteine-rich repeat protein; KEGG: mxa:MXAN_1733 cysteine-rich repeat-containing protein. (511 aa)    
Predicted Functional Partners:
Hoch_2270
KEGG: mxa:MXAN_4181 hypothetical protein.
  
    0.754
Hoch_4767
PFAM: FG-GAP repeat protein; KEGG: mxa:MXAN_7127 FG-GAP repeat-containing protein.
  
    0.707
Hoch_6300
KEGG: mxa:MXAN_6352 hypothetical protein; Belongs to the peptidase S1B family.
  
     0.698
Hoch_4076
KEGG: mxa:MXAN_5485 hypothetical protein.
  
     0.696
Hoch_4757
KEGG: mxa:MXAN_3131 hypothetical protein.
  
     0.693
Hoch_1025
KEGG: mxa:MXAN_1883 hypothetical protein.
  
     0.688
Hoch_0592
KEGG: mxa:MXAN_1883 hypothetical protein.
  
     0.687
Hoch_4720
KEGG: scl:sce3660 hypothetical protein.
  
     0.665
Hoch_0837
KEGG: mxa:MXAN_1864 N6 adenine-specific DNA methyltransferase.
  
    0.650
Hoch_0631
SMART: Hedgehog/intein hint domain protein; KEGG: mxa:MXAN_1882 putative helicase, ATP- dependent, intein-containing.
  
     0.646
Your Current Organism:
Haliangium ochraceum
NCBI taxonomy Id: 502025
Other names: H. ochraceum DSM 14365, Haliangium ochraceum DSM 14365, Haliangium ochraceum SMP-2, Haliangium ochraceum str. DSM 14365, Haliangium ochraceum strain DSM 14365, myxobacterium SMP-2
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.