STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
Hoch_5677PFAM: protein of unknown function DUF52; KEGG: pca:Pcar_1651 dioxygenase; Belongs to the MEMO1 family. (275 aa)    
Predicted Functional Partners:
Hoch_4169
PFAM: AMMECR1 domain protein; KEGG: geo:Geob_3548 AMMECR1 domain protein.
    0.990
Hoch_5878
PFAM: Radical SAM domain protein; KEGG: tbd:Tbd_1585 hypothetical protein.
     0.946
Hoch_0189
PFAM: Radical SAM domain protein; SMART: Elongator protein 3/MiaB/NifB; KEGG: ppd:Ppro_0779 radical SAM domain-containing protein.
     0.915
Hoch_5676
PFAM: metallophosphoesterase; KEGG: scl:sce3807 putative metallo-phosphoesterase.
       0.520
Your Current Organism:
Haliangium ochraceum
NCBI taxonomy Id: 502025
Other names: H. ochraceum DSM 14365, Haliangium ochraceum DSM 14365, Haliangium ochraceum SMP-2, Haliangium ochraceum str. DSM 14365, Haliangium ochraceum strain DSM 14365, myxobacterium SMP-2
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.