STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
Hoch_5696KEGG: sde:Sde_3553 hypothetical protein. (374 aa)    
Predicted Functional Partners:
Hoch_5697
KEGG: sde:Sde_3552 putative lipoprotein.
 
     0.950
Hoch_2402
KEGG: mmw:Mmwyl1_2331 putative lipoprotein.
 
     0.745
Hoch_5695
Hypothetical protein.
       0.598
Hoch_3961
PFAM: Tetratricopeptide TPR_2 repeat protein; TPR repeat-containing protein; SMART: Tetratricopeptide repeat; KEGG: mxa:MXAN_1922 TPR repeat-containing protein.
 
     0.574
Hoch_5698
Hypothetical protein; KEGG: mxa:MXAN_3377 FHA/TonB domain-containing protein.
       0.533
Hoch_5751
TIGRFAM: YD repeat protein; KEGG: nmu:Nmul_A1373 integrins alpha chain.
  
     0.532
Hoch_1512
TIGRFAM: YD repeat protein; KEGG: bpd:BURPS668_0606 rhs family protein.
  
     0.524
Hoch_5858
PFAM: PBS lyase HEAT domain protein repeat- containing protein; KEGG: scl:sce6075 hypothetical protein.
  
     0.499
Hoch_2423
PFAM: Aspartyl/Asparaginyl beta-hydroxylase; KEGG: sfr:Sfri_0891 SecC motif-containing protein.
  
     0.494
Hoch_6627
PFAM: NLP/P60 protein; KEGG: mca:MCA0716 hypothetical protein.
  
     0.487
Your Current Organism:
Haliangium ochraceum
NCBI taxonomy Id: 502025
Other names: H. ochraceum DSM 14365, Haliangium ochraceum DSM 14365, Haliangium ochraceum SMP-2, Haliangium ochraceum str. DSM 14365, Haliangium ochraceum strain DSM 14365, myxobacterium SMP-2
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.