STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
Hoch_5766PFAM: Cl- channel voltage-gated family protein; KEGG: mxa:MXAN_0978 voltage-gated chloride channel. (511 aa)    
Predicted Functional Partners:
Hoch_0592
KEGG: mxa:MXAN_1883 hypothetical protein.
  
     0.612
Hoch_1025
KEGG: mxa:MXAN_1883 hypothetical protein.
  
     0.602
Hoch_0837
KEGG: mxa:MXAN_1864 N6 adenine-specific DNA methyltransferase.
  
     0.552
Hoch_0849
TIGRFAM: phage tail tape measure protein, TP901 family; PFAM: tail tape measure protein TP901 core region; KEGG: mxa:MXAN_1848 TP901 family phage tail tape measure protein, core region.
  
     0.536
Hoch_0631
SMART: Hedgehog/intein hint domain protein; KEGG: mxa:MXAN_1882 putative helicase, ATP- dependent, intein-containing.
  
     0.527
Hoch_4149
TIGRFAM: amino acid carrier protein; PFAM: sodium:alanine symporter; KEGG: amc:MADE_01260 Na(+)-linked D-alanine glycine permease.
  
    0.525
Hoch_0647
PFAM: D12 class N6 adenine-specific DNA methyltransferase; KEGG: mxa:MXAN_1864 N6 adenine-specific DNA methyltransferase.
  
     0.519
Hoch_0659
TIGRFAM: phage tail tape measure protein, TP901 family; PFAM: tail tape measure protein TP901 core region; KEGG: mxa:MXAN_1848 TP901 family phage tail tape measure protein, core region.
  
     0.516
Hoch_5767
PFAM: Protein of unknown function DUF2341; KEGG: bur:Bcep18194_B1087 MotA/TolQ/ExbB proton channel.
       0.508
Hoch_5765
KEGG: hch:HCH_02592 hypothetical protein.
       0.488
Your Current Organism:
Haliangium ochraceum
NCBI taxonomy Id: 502025
Other names: H. ochraceum DSM 14365, Haliangium ochraceum DSM 14365, Haliangium ochraceum SMP-2, Haliangium ochraceum str. DSM 14365, Haliangium ochraceum strain DSM 14365, myxobacterium SMP-2
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.