STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
Hoch_5877Transcriptional regulator, XRE family; PFAM: helix-turn-helix domain protein; SMART: helix-turn-helix domain protein; KEGG: mxa:MXAN_6103 putative transcriptional regulator. (133 aa)    
Predicted Functional Partners:
Hoch_4767
PFAM: FG-GAP repeat protein; KEGG: mxa:MXAN_7127 FG-GAP repeat-containing protein.
  
 
   0.722
Hoch_6300
KEGG: mxa:MXAN_6352 hypothetical protein; Belongs to the peptidase S1B family.
  
     0.708
Hoch_4765
PFAM: fatty acid desaturase; KEGG: bur:Bcep18194_B0742 fatty acid desaturase.
  
     0.596
Hoch_2270
KEGG: mxa:MXAN_4181 hypothetical protein.
  
    0.594
Hoch_4757
KEGG: mxa:MXAN_3131 hypothetical protein.
  
     0.588
Hoch_1825
TIGRFAM: HipA N-terminal domain protein; PFAM: HipA domain protein; KEGG: mxa:MXAN_0097 HipA-like protein.
 
 
 0.546
Hoch_6671
KEGG: mxa:MXAN_5998 putative lipase.
  
     0.545
Hoch_4758
KEGG: mxa:MXAN_3132 hypothetical protein.
  
     0.544
Hoch_3814
Response regulator receiver modulated diguanylate cyclase with PAS/PAC sensor; KEGG: mxa:MXAN_4445 sensory box histidine kinase/response regulator; TIGRFAM: PAS sensor protein; PFAM: ATP-binding region ATPase domain protein; response regulator receiver; GGDEF domain containing protein; PAS fold domain protein; histidine kinase A domain protein; SMART: ATP-binding region ATPase domain protein; histidine kinase A domain protein; GGDEF domain containing protein; response regulator receiver.
  
   
 0.528
Hoch_4076
KEGG: mxa:MXAN_5485 hypothetical protein.
  
   
 0.501
Your Current Organism:
Haliangium ochraceum
NCBI taxonomy Id: 502025
Other names: H. ochraceum DSM 14365, Haliangium ochraceum DSM 14365, Haliangium ochraceum SMP-2, Haliangium ochraceum str. DSM 14365, Haliangium ochraceum strain DSM 14365, myxobacterium SMP-2
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.