STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
Hoch_5878PFAM: Radical SAM domain protein; KEGG: tbd:Tbd_1585 hypothetical protein. (362 aa)    
Predicted Functional Partners:
Hoch_5677
PFAM: protein of unknown function DUF52; KEGG: pca:Pcar_1651 dioxygenase; Belongs to the MEMO1 family.
     0.946
Hoch_4169
PFAM: AMMECR1 domain protein; KEGG: geo:Geob_3548 AMMECR1 domain protein.
     0.927
Hoch_2344
PFAM: iron-containing alcohol dehydrogenase; KEGG: alcohol dehydrogenase, iron containing, 1.
 
  
 0.502
Hoch_2470
PFAM: iron-containing alcohol dehydrogenase; KEGG: scl:sce3952 alcohol dehydrogenase.
 
  
 0.484
Hoch_5877
Transcriptional regulator, XRE family; PFAM: helix-turn-helix domain protein; SMART: helix-turn-helix domain protein; KEGG: mxa:MXAN_6103 putative transcriptional regulator.
       0.469
Hoch_2652
PFAM: Transketolase domain protein; dehydrogenase E1 component; Transketolase central region; KEGG: rhi:NGR_b11450 transketolase, central region.
   
  
 0.463
Hoch_4217
Malate dehydrogenase (oxaloacetate- decarboxylating) (NADP(+))., Phosphate acetyltransferase; PFAM: malic protein NAD-binding; malic protein domain protein; phosphate acetyl/butaryl transferase; KEGG: ade:Adeh_3930 malic enzyme.
  
  
 0.417
Hoch_5825
TIGRFAM: homogentisate 1,2-dioxygenase; PFAM: homogentisate 12-dioxygenase; iron-containing alcohol dehydrogenase; KEGG: bxe:Bxe_C0994 homogentisate 1,2-dioxygenase.
  
  
 0.416
Hoch_4115
PFAM: Rieske [2Fe-2S] iron-sulphur domain; KEGG: bmj:BMULJ_06144 putative ring-hydroxylating dioxygenase large terminal subunit.
  
  
 0.413
Hoch_6395
PFAM: BFD domain protein [2Fe-2S]-binding domain protein; KEGG: scl:sce1647 bacterioferritin-associated ferredoxin.
  
  
 0.407
Your Current Organism:
Haliangium ochraceum
NCBI taxonomy Id: 502025
Other names: H. ochraceum DSM 14365, Haliangium ochraceum DSM 14365, Haliangium ochraceum SMP-2, Haliangium ochraceum str. DSM 14365, Haliangium ochraceum strain DSM 14365, myxobacterium SMP-2
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