STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
Hoch_5929Penicillin-binding protein 2; KEGG: scl:sce2411 peptidoglycan glycosyltransferase; TIGRFAM: penicillin-binding protein 2; PFAM: penicillin-binding protein transpeptidase; Penicillin-binding protein dimerisation domain. (663 aa)    
Predicted Functional Partners:
Hoch_5928
TIGRFAM: rod shape-determining protein RodA; PFAM: cell cycle protein; KEGG: sat:SYN_00550 rod shape-determining protein; Belongs to the SEDS family.
 
 0.997
Hoch_5932
TIGRFAM: cell shape determining protein, MreB/Mrl family; PFAM: cell shape determining protein MreB/Mrl; cell division protein FtsA; KEGG: scl:sce2408 rod shape-determining protein MreB.
 
 0.967
Hoch_5931
Rod shape-determining protein MreC; Involved in formation and maintenance of cell shape.
 
 
 0.966
Hoch_5026
PFAM: penicillin-binding protein transpeptidase; KEGG: tgr:Tgr7_0763 peptidoglycan glycosyltransferase.
  
  
 0.942
Hoch_1952
Peptidoglycan glycosyltransferase; PFAM: penicillin-binding protein transpeptidase; Penicillin-binding protein dimerisation domain; KEGG: gsu:GSU3075 penicillin-binding protein.
  
  
0.928
Hoch_2368
PFAM: penicillin-binding protein transpeptidase; KEGG: afw:Anae109_0386 penicillin-binding protein transpeptidase.
  
  
 
0.912
Hoch_1957
TIGRFAM: cell division protein FtsW; PFAM: cell cycle protein; KEGG: mxa:MXAN_5605 cell cycle protein FtsW; Belongs to the SEDS family.
 
 0.908
murE
UDP-N-acetylmuramyl-tripeptide synthetase; Catalyzes the addition of meso-diaminopimelic acid to the nucleotide precursor UDP-N-acetylmuramoyl-L-alanyl-D-glutamate (UMAG) in the biosynthesis of bacterial cell-wall peptidoglycan. Belongs to the MurCDEF family. MurE subfamily.
  
 0.842
Hoch_2139
Peptidoglycan glycosyltransferase; PFAM: glycosyl transferase family 51; penicillin- binding protein transpeptidase; KEGG: acp:A2cp1_1927 glycosyl transferase family 51.
  
  
 0.805
Hoch_5930
Hypothetical protein; KEGG: tau:Tola_0255 rod shape-determining protein MreD.
       0.773
Your Current Organism:
Haliangium ochraceum
NCBI taxonomy Id: 502025
Other names: H. ochraceum DSM 14365, Haliangium ochraceum DSM 14365, Haliangium ochraceum SMP-2, Haliangium ochraceum str. DSM 14365, Haliangium ochraceum strain DSM 14365, myxobacterium SMP-2
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