STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
Hoch_5943PFAM: Disintegrin; SMART: Disintegrin; KEGG: hypothetical protein. (343 aa)    
Predicted Functional Partners:
Hoch_6326
PFAM: Endonuclease I; KEGG: swd:Swoo_0543 endonuclease I.
 
     0.675
Hoch_6539
KEGG: afw:Anae109_2880 hypothetical protein.
  
     0.670
Hoch_6059
PFAM: Thrombospondin type 3 repeat; KEGG: scl:sce3565 hypothetical protein.
  
     0.609
Hoch_3457
PFAM: low-density lipoprotein receptor YWTD repeat; SMART: low-density lipoprotein receptor YWTD repeat; KEGG: LRP5; low density lipoprotein receptor- related protein 5; K03068 low density lipoprotein receptor-related protein 5/6.
  
     0.570
Hoch_2435
PFAM: Thrombospondin type 3 repeat; KEGG: scl:sce3565 hypothetical protein.
  
     0.561
Hoch_2311
KEGG: Calcium-binding protein.
  
     0.544
Hoch_4449
KEGG: hypothetical protein.
  
     0.537
aat
leucyl/phenylalanyl-tRNA/protein transferase; Functions in the N-end rule pathway of protein degradation where it conjugates Leu, Phe and, less efficiently, Met from aminoacyl- tRNAs to the N-termini of proteins containing an N-terminal arginine or lysine.
       0.536
Hoch_5944
KEGG: scl:sce5575 hypothetical protein.
       0.512
Hoch_5945
KEGG: mxa:MXAN_4587 hypothetical protein.
       0.503
Your Current Organism:
Haliangium ochraceum
NCBI taxonomy Id: 502025
Other names: H. ochraceum DSM 14365, Haliangium ochraceum DSM 14365, Haliangium ochraceum SMP-2, Haliangium ochraceum str. DSM 14365, Haliangium ochraceum strain DSM 14365, myxobacterium SMP-2
Server load: low (14%) [HD]
STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.