STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
Hoch_5956Hypothetical protein. (123 aa)    
Predicted Functional Partners:
Hoch_5953
KEGG: dvl:Dvul_2583 capsule polysaccharide export protein-like protein.
       0.773
Hoch_5954
PFAM: ABC transporter related; SMART: AAA ATPase; KEGG: avi:Avi_0712 cell surface polysaccharide export ABC-2 transporter ATP-binding protein.
       0.773
Hoch_5955
PFAM: ABC-2 type transporter; KEGG: bpe:BP1623 putative polysialic acid transport protein.
       0.773
Hoch_5952
PFAM: polysaccharide export protein; KEGG: tgr:Tgr7_1307 polysaccharide export protein.
       0.752
Hoch_5957
KEGG: mmw:Mmwyl1_1123 KpsF/GutQ family protein; TIGRFAM: KpsF/GutQ family protein; PFAM: sugar isomerase (SIS); CBS domain containing protein; Belongs to the SIS family. GutQ/KpsF subfamily.
       0.723
Hoch_5950
TIGRFAM: 3-deoxy-D-manno-octulosonate 8-phosphate phosphatase, YrbI family; hydrolase, HAD-superfamily, subfamily IIIA; KEGG: aeh:Mlg_2226 3-deoxy-D-manno-octulosonate 8- phosphate phosphatase.
       0.694
kdsA
TIGRFAM: 2-dehydro-3-deoxyphosphooctonate aldolase; PFAM: DAHP synthetase I/KDSA; KEGG: tcx:Tcr_1261 2-dehydro-3-deoxyphosphooctonate aldolase.
       0.694
Hoch_5946
KEGG: sfu:Sfum_1123 hypothetical protein.
       0.489
Hoch_5947
PFAM: Capsule polysaccharide biosynthesis protein; KEGG: tgr:Tgr7_1303 capsule polysaccharide biosynthesis protein.
       0.489
Hoch_5948
PFAM: Capsule polysaccharide biosynthesis protein; KEGG: nmn:NMCC_0090 capsule polysaccharide modification protein.
       0.489
Your Current Organism:
Haliangium ochraceum
NCBI taxonomy Id: 502025
Other names: H. ochraceum DSM 14365, Haliangium ochraceum DSM 14365, Haliangium ochraceum SMP-2, Haliangium ochraceum str. DSM 14365, Haliangium ochraceum strain DSM 14365, myxobacterium SMP-2
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.