STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
Hoch_5988Integral membrane sensor signal transduction histidine kinase; PFAM: ATP-binding region ATPase domain protein; histidine kinase A domain protein; histidine kinase HAMP region domain protein; SMART: ATP-binding region ATPase domain protein; histidine kinase A domain protein; histidine kinase HAMP region domain protein; KEGG: mxa:MXAN_1249 developmental sensor histidine kinase SasS. (516 aa)    
Predicted Functional Partners:
Hoch_5989
Two component, sigma54 specific, transcriptional regulator, Fis family; PFAM: sigma-54 factor interaction domain-containing protein; helix-turn-helix Fis-type; response regulator receiver; SMART: response regulator receiver; AAA ATPase; KEGG: mxa:MXAN_1245 sigma-54 dependent DNA-binding response regulator SasR.
 
 
 0.809
Hoch_5056
PFAM: response regulator receiver; SMART: response regulator receiver; KEGG: pin:Ping_0978 response regulator receiver modulated diguanylate cyclase.
  
 
 0.801
Hoch_5910
PFAM: response regulator receiver; SMART: response regulator receiver; KEGG: afw:Anae109_1134 response regulator receiver protein.
  
 
   0.799
Hoch_5999
PFAM: response regulator receiver; SMART: response regulator receiver; KEGG: afw:Anae109_3956 response regulator receiver protein.
  
 
   0.799
Hoch_0280
PFAM: response regulator receiver; SMART: response regulator receiver; GGDEF domain containing protein; KEGG: pin:Ping_0978 response regulator receiver modulated diguanylate cyclase.
  
 
 0.797
Hoch_4952
PFAM: response regulator receiver; SMART: response regulator receiver; KEGG: scl:sce3649 hypothetical protein.
  
 
   0.797
Hoch_6875
PFAM: response regulator receiver; SMART: response regulator receiver; KEGG: rfr:Rfer_3778 response regulator receiver domain-containing protein.
  
 
   0.796
Hoch_6888
PFAM: response regulator receiver; Tetratricopeptide TPR_4; SMART: response regulator receiver; KEGG: mxa:MXAN_2050 response regulator.
  
 
 
 0.791
Hoch_0552
Two component transcriptional regulator, winged helix family; PFAM: response regulator receiver; transcriptional regulator domain protein; SMART: response regulator receiver; KEGG: mxa:MXAN_1349 DNA-binding response regulator.
  
 
   0.785
Hoch_3001
PAS/PAC sensor signal transduction histidine kinase; KEGG: dma:DMR_09210 putative two-component hybrid sensor and regulator; TIGRFAM: PAS sensor protein; PFAM: ATP-binding region ATPase domain protein; PAS fold-4 domain protein; histidine kinase A domain protein; SMART: ATP-binding region ATPase domain protein; histidine kinase A domain protein; PAS domain containing protein.
 
 
 
 0.784
Your Current Organism:
Haliangium ochraceum
NCBI taxonomy Id: 502025
Other names: H. ochraceum DSM 14365, Haliangium ochraceum DSM 14365, Haliangium ochraceum SMP-2, Haliangium ochraceum str. DSM 14365, Haliangium ochraceum strain DSM 14365, myxobacterium SMP-2
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.