STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
Hoch_6017PFAM: Taurine catabolism dioxygenase TauD/TfdA; KEGG: bpt:Bpet5008 taurine dioxygenase. (301 aa)    
Predicted Functional Partners:
Hoch_6016
Hypothetical protein.
  
  
 0.898
Hoch_6014
PFAM: cytochrome P450; KEGG: scl:sce0200 putative cytochrome P450 CYP261A1.
       0.775
Hoch_6013
PFAM: Orn/DAP/Arg decarboxylase 2; KEGG: bme:BMEI0084 diaminopimelate decarboxylase.
       0.773
Hoch_6015
PFAM: aminotransferase class-III; KEGG: pca:Pcar_0266 glutamate-1-semialdehyde-2,1- aminomutase; Belongs to the class-III pyridoxal-phosphate-dependent aminotransferase family.
       0.773
Hoch_6018
PFAM: Taurine catabolism dioxygenase TauD/TfdA; KEGG: pag:PLES_30001 putative regulatory protein.
 
     0.695
Hoch_1760
PFAM: metal-dependent phosphohydrolase HD sub domain; KEGG: pfs:PFLU4653 hypothetical protein.
 
     0.574
Hoch_6170
TIGRFAM: thioester reductase domain protein; PFAM: AMP-dependent synthetase and ligase; Male sterility domain; NAD-dependent epimerase/dehydratase; phosphopantetheine-binding; KEGG: scl:sce8262 non-ribosomal peptide synthetase.
 
  
 0.542
Hoch_1750
TIGRFAM: amino acid adenylation domain protein; PFAM: AMP-dependent synthetase and ligase; Beta- ketoacyl synthase; aminotransferase class-III; Acyl transferase; Luciferase-like, subgroup; phosphopantetheine- binding; condensation domain protein; KEGG: rso:RS05860 peptide synthetase protein.
  
  
 0.518
Hoch_6012
PFAM: metallophosphoesterase; KEGG: scl:sce7577 putative integral membrane protein.
       0.486
Hoch_5728
PFAM: Phytanoyl-CoA dioxygenase; KEGG: pla:Plav_3154 phytanoyl-CoA dioxygenase.
  
    0.437
Your Current Organism:
Haliangium ochraceum
NCBI taxonomy Id: 502025
Other names: H. ochraceum DSM 14365, Haliangium ochraceum DSM 14365, Haliangium ochraceum SMP-2, Haliangium ochraceum str. DSM 14365, Haliangium ochraceum strain DSM 14365, myxobacterium SMP-2
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