STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
Hoch_6188KEGG: ank:AnaeK_4049 hypothetical protein. (65 aa)    
Predicted Functional Partners:
Hoch_6187
PFAM: peptidase S9 prolyl oligopeptidase active site domain protein; peptidase S15; WD40 domain protein beta Propeller; phospholipase/Carboxylesterase; KEGG: pat:Patl_0194 peptidase S9, prolyl oligopeptidase active site region.
       0.773
Hoch_6186
PFAM: Tetratricopeptide TPR_4; SMART: Tetratricopeptide repeat; KEGG: acp:A2cp1_3455 tetratricopeptide TPR_2 repeat protein.
       0.526
Hoch_4767
PFAM: FG-GAP repeat protein; KEGG: mxa:MXAN_7127 FG-GAP repeat-containing protein.
  
     0.499
Hoch_0023
Hypothetical protein; KEGG: mfa:Mfla_2392 OmpA/MotB.
  
     0.446
Hoch_5273
PFAM: transcription elongation factor GreA/GreB domain protein; KEGG: mxa:MXAN_0198 GreA/GreB domain-containing protein.
  
     0.444
Hoch_6197
RNA polymerase, sigma-24 subunit, ECF subfamily; TIGRFAM: RNA polymerase sigma factor; RNA polymerase sigma factor, sigma-70 family; PFAM: sigma factor ECF family protein; Sigma-70 region 4 type 2; KEGG: hch:HCH_04888 DNA-directed RNA polymerase specialized sigma subunit sigma24-like protein.
  
     0.420
Hoch_6227
RNA polymerase, sigma-24 subunit, ECF subfamily; TIGRFAM: RNA polymerase sigma factor; RNA polymerase sigma factor, sigma-70 family; PFAM: sigma factor ECF family protein; Sigma-70 region 4 type 2; KEGG: hch:HCH_04888 DNA-directed RNA polymerase specialized sigma subunit sigma24-like protein.
  
     0.414
Hoch_1402
RNA polymerase, sigma-24 subunit, ECF subfamily; TIGRFAM: RNA polymerase sigma factor; RNA polymerase sigma factor, sigma-70 family; PFAM: sigma factor ECF family protein; Sigma-70 region 4 type 2; KEGG: scl:sce0681 ECF family RNA polymerase sigma factor.
  
     0.413
Hoch_2270
KEGG: mxa:MXAN_4181 hypothetical protein.
  
     0.404
Your Current Organism:
Haliangium ochraceum
NCBI taxonomy Id: 502025
Other names: H. ochraceum DSM 14365, Haliangium ochraceum DSM 14365, Haliangium ochraceum SMP-2, Haliangium ochraceum str. DSM 14365, Haliangium ochraceum strain DSM 14365, myxobacterium SMP-2
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.