STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
Hoch_6300KEGG: mxa:MXAN_6352 hypothetical protein; Belongs to the peptidase S1B family. (573 aa)    
Predicted Functional Partners:
Hoch_4767
PFAM: FG-GAP repeat protein; KEGG: mxa:MXAN_7127 FG-GAP repeat-containing protein.
  
     0.773
Hoch_1566
PFAM: HEAT domain containing protein; PBS lyase HEAT domain protein repeat-containing protein; SMART: WD-40 repeat protein; PBS lyase HEAT domain protein repeat-containing protein; KEGG: scl:sce_pseudo_02 pseudogene.
  
     0.771
Hoch_2270
KEGG: mxa:MXAN_4181 hypothetical protein.
  
     0.771
Hoch_4076
KEGG: mxa:MXAN_5485 hypothetical protein.
 
     0.762
Hoch_4758
KEGG: mxa:MXAN_3132 hypothetical protein.
  
     0.760
Hoch_0063
Transcriptional regulator, XRE family; PFAM: helix-turn-helix domain protein; SMART: helix-turn-helix domain protein; KEGG: mxa:MXAN_0633 DNA-binding protein.
  
     0.758
Hoch_3804
PFAM: metallophosphoesterase; KEGG: scl:sce7712 hypothetical protein.
  
     0.758
Hoch_6836
Transcriptional regulator, XRE family; PFAM: helix-turn-helix domain protein; SMART: helix-turn-helix domain protein; KEGG: mxa:MXAN_0228 DNA-binding protein.
  
     0.758
Hoch_4757
KEGG: mxa:MXAN_3131 hypothetical protein.
  
     0.748
Hoch_4765
PFAM: fatty acid desaturase; KEGG: bur:Bcep18194_B0742 fatty acid desaturase.
  
     0.745
Your Current Organism:
Haliangium ochraceum
NCBI taxonomy Id: 502025
Other names: H. ochraceum DSM 14365, Haliangium ochraceum DSM 14365, Haliangium ochraceum SMP-2, Haliangium ochraceum str. DSM 14365, Haliangium ochraceum strain DSM 14365, myxobacterium SMP-2
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.