STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
Hoch_6345PFAM: regulatory protein TetR; KEGG: dat:HRM2_21660 HTH-type transcriptional regulator. (241 aa)    
Predicted Functional Partners:
Hoch_6346
TIGRFAM: RND efflux system, outer membrane lipoprotein, NodT family; PFAM: outer membrane efflux protein; KEGG: dat:HRM2_00920 putative outer membrane efflux protein (OprM-family protein).
     
 0.776
Hoch_6347
TIGRFAM: efflux transporter, RND family, MFP subunit; KEGG: pca:Pcar_0668 Acr family membrane-fusion protein; Belongs to the membrane fusion protein (MFP) (TC 8.A.1) family.
     
 0.619
Hoch_6348
PFAM: acriflavin resistance protein; KEGG: dat:HRM2_00900 putative H+-transporting two- sector ATPase, gamma subunit (AcrC-family protein); Belongs to the resistance-nodulation-cell division (RND) (TC 2.A.6) family.
     
 0.559
Hoch_6216
PFAM: regulatory protein TetR; KEGG: afw:Anae109_2980 TetR family transcriptional regulator.
  
     0.510
Hoch_6487
PFAM: regulatory protein TetR; KEGG: scl:sce4511 TetR family transcriptional regulator.
  
     0.468
Your Current Organism:
Haliangium ochraceum
NCBI taxonomy Id: 502025
Other names: H. ochraceum DSM 14365, Haliangium ochraceum DSM 14365, Haliangium ochraceum SMP-2, Haliangium ochraceum str. DSM 14365, Haliangium ochraceum strain DSM 14365, myxobacterium SMP-2
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.