STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
Hoch_6558PFAM: protein of unknown function DUF1244; KEGG: maq:Maqu_2333 hypothetical protein. (81 aa)    
Predicted Functional Partners:
Hoch_6559
PFAM: protein of unknown function UPF0047; KEGG: hha:Hhal_1102 hypothetical protein.
       0.782
Hoch_5770
PFAM: N-formylglutamate amidohydrolase; KEGG: bra:BRADO1349 hypothetical protein.
     0.728
Hoch_6457
TIGRFAM: molybdenum cofactor biosynthesis protein B; molybdenum cofactor synthesis domain protein; PFAM: molybdopterin binding domain; KEGG: afr:AFE_3217 molybdenum cofactor biosynthesis protein B.
 
    0.724
Hoch_4563
PFAM: 4-diphosphocytidyl-2C-methyl-D-erythritol synthase; KEGG: pla:Plav_2955 4-diphosphocytidyl-2C-methyl-D- erythritol synthase.
 
     0.566
Hoch_6556
PFAM: Transcription regulator, AsnC-type-like; SMART: Transcription regulator, AsnC-type; KEGG: aha:AHA_0491 AsnC family transcriptional regulator.
       0.538
Hoch_6557
PFAM: peptidase S37 tripeptidyl aminopeptidase; KEGG: scl:sce7027 putative secreted tripeptidyl aminopeptidase.
       0.538
Your Current Organism:
Haliangium ochraceum
NCBI taxonomy Id: 502025
Other names: H. ochraceum DSM 14365, Haliangium ochraceum DSM 14365, Haliangium ochraceum SMP-2, Haliangium ochraceum str. DSM 14365, Haliangium ochraceum strain DSM 14365, myxobacterium SMP-2
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.