STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
Hoch_6665PFAM: peptidase M16 domain protein; KEGG: mxa:MXAN_2091 M16 family peptidase. (527 aa)    
Predicted Functional Partners:
Hoch_6664
PFAM: peptidase M16 domain protein; KEGG: afw:Anae109_1343 peptidase M16 domain- containing protein.
     0.995
Hoch_2315
PFAM: peptidase M16 domain protein; KEGG: scl:sce3834 hypothetical protein.
 
     0.964
Hoch_0281
PFAM: peptidase M16 domain protein; KEGG: ade:Adeh_0576 peptidase M16-like; Belongs to the peptidase M16 family.
 
     0.734
Hoch_1460
PFAM: peptidase M16 domain protein; KEGG: ank:AnaeK_0309 peptidase M16 domain protein.
  
     0.734
Hoch_0092
PFAM: peptidase M16 domain protein; KEGG: azo:azo0765 Zn dependent peptidase.
 
    
0.721
Hoch_1925
KEGG: afw:Anae109_4348 NADH-quinone oxidoreductase, F subunit; TIGRFAM: NADH-quinone oxidoreductase, F subunit; PFAM: Respiratory-chain NADH dehydrogenase domain 51 kDa subunit; NADH ubiquinone oxidoreductase, F subunit, iron sulphur binding; Soluble ligand binding domain.
   
 
 0.715
Hoch_1595
KEGG: bur:Bcep18194_C6674 hypothetical protein.
   
 0.692
Hoch_3894
PFAM: Rieske [2Fe-2S] iron-sulphur domain; KEGG: scl:sce0366 hypothetical protein.
   
 0.692
Hoch_4517
PFAM: NADH:ubiquinone oxidoreductase, subunit G, iron-sulphur binding; ferredoxin; molybdopterin oxidoreductase Fe4S4 region; KEGG: scl:sce0526 NADH dehydrogenase (ubiquinone).
   
 
 0.656
Hoch_1924
TIGRFAM: NADH-quinone oxidoreductase, E subunit; PFAM: NADH dehydrogenase (ubiquinone) 24 kDa subunit; KEGG: NDUFV2; NADH dehydrogenase (ubiquinone) flavoprotein 2, 24kDa; K03943 NADH dehydrogenase (ubiquinone) flavoprotein 2.
   
 
 0.645
Your Current Organism:
Haliangium ochraceum
NCBI taxonomy Id: 502025
Other names: H. ochraceum DSM 14365, Haliangium ochraceum DSM 14365, Haliangium ochraceum SMP-2, Haliangium ochraceum str. DSM 14365, Haliangium ochraceum strain DSM 14365, myxobacterium SMP-2
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