STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
Hoch_6805Protease-like protein; KEGG: bph:Bphy_6936 peptidase S53 propeptide. (591 aa)    
Predicted Functional Partners:
aroE
Shikimate 5-dehydrogenase; Involved in the biosynthesis of the chorismate, which leads to the biosynthesis of aromatic amino acids. Catalyzes the reversible NADPH linked reduction of 3-dehydroshikimate (DHSA) to yield shikimate (SA).
       0.594
xseA
Exodeoxyribonuclease VII, large subunit; Bidirectionally degrades single-stranded DNA into large acid- insoluble oligonucleotides, which are then degraded further into small acid-soluble oligonucleotides; Belongs to the XseA family.
       0.594
Hoch_5510
PFAM: tryptophan halogenase; FAD dependent oxidoreductase; KEGG: pol:Bpro_3311 tryptophan halogenase.
 
     0.589
Hoch_6752
KEGG: hypothetical protein.
  
     0.587
Hoch_2423
PFAM: Aspartyl/Asparaginyl beta-hydroxylase; KEGG: sfr:Sfri_0891 SecC motif-containing protein.
 
     0.580
Hoch_0930
TIGRFAM: cysteine-rich repeat protein; KEGG: scl:sce4949 hypothetical protein.
  
     0.529
Hoch_0738
TIGRFAM: cysteine-rich repeat protein; KEGG: scl:sce4949 hypothetical protein.
  
     0.526
Hoch_2826
TIGRFAM: cysteine-rich repeat protein; KEGG: scl:sce4949 hypothetical protein.
  
     0.526
Hoch_3827
TIGRFAM: cysteine-rich repeat protein; KEGG: scl:sce4949 hypothetical protein.
  
     0.520
Hoch_5968
PFAM: protein of unknown function DUF1552; KEGG: scl:sce4602 signal peptide prediction.
  
     0.475
Your Current Organism:
Haliangium ochraceum
NCBI taxonomy Id: 502025
Other names: H. ochraceum DSM 14365, Haliangium ochraceum DSM 14365, Haliangium ochraceum SMP-2, Haliangium ochraceum str. DSM 14365, Haliangium ochraceum strain DSM 14365, myxobacterium SMP-2
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.