STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
Hoch_6851TIGRFAM: amino acid/peptide transporter; PFAM: TGF-beta receptor type I/II extracellular region; major facilitator superfamily MFS_1; KEGG: ilo:IL1430 dipeptide/tripeptide permease. (498 aa)    
Predicted Functional Partners:
Hoch_6850
PFAM: Glutathione S-transferase domain; KEGG: pmy:Pmen_1914 glutathione S-transferase domain-containing protein.
     
 0.639
Hoch_6849
PFAM: Alcohol dehydrogenase zinc-binding domain protein; KEGG: similar to Prostaglandin reductase 2.
       0.623
Hoch_6852
Putative signal transduction protein with CBS domains; PFAM: CBS domain containing protein; SMART: CBS domain containing protein; KEGG: afw:Anae109_2437 signal transduction protein.
     
 0.483
Hoch_3585
PFAM: amino acid permease-associated region; KEGG: bpt:Bpet3919 amino acid transporter.
  
 
 0.430
Hoch_1917
PFAM: amino acid permease-associated region; KEGG: ppd:Ppro_1252 amino acid permease-associated region.
  
 
 0.429
Your Current Organism:
Haliangium ochraceum
NCBI taxonomy Id: 502025
Other names: H. ochraceum DSM 14365, Haliangium ochraceum DSM 14365, Haliangium ochraceum SMP-2, Haliangium ochraceum str. DSM 14365, Haliangium ochraceum strain DSM 14365, myxobacterium SMP-2
Server load: low (30%) [HD]
STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.