STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
phnKPhosphonate C-P lyase system protein PhnK; Derived by automated computational analysis using gene prediction method: Protein Homology. (260 aa)    
Predicted Functional Partners:
OAZ13697.1
Phosphonate ABC transporter ATP-binding protein; Derived by automated computational analysis using gene prediction method: Protein Homology.
 
0.999
OAZ13699.1
Carbon-phosphorus lyase; Derived by automated computational analysis using gene prediction method: Protein Homology.
 
 0.999
OAZ13700.1
Carbon-phosphorus lyase complex subunit PhnI; Required for the use of phosphonate and phosphite; Derived by automated computational analysis using gene prediction method: Protein Homology.
 
 
 0.999
OAZ13701.1
Phosphonate metabolism protein PhnH; Derived by automated computational analysis using gene prediction method: Protein Homology.
 
 
 0.999
OAZ13702.1
Phosphonate metabolism protein PhnG; Derived by automated computational analysis using gene prediction method: Protein Homology.
 
 
 0.999
OAZ13696.1
Phosphonate metabolism protein PhnM; Derived by automated computational analysis using gene prediction method: Protein Homology.
 
  
 0.988
OAZ13695.1
Guanylate kinase; Derived by automated computational analysis using gene prediction method: Protein Homology.
 
  
 0.975
OAZ13703.1
GntR family transcriptional regulator; Derived by automated computational analysis using gene prediction method: Protein Homology.
 
  
 0.973
OAZ15315.1
ABC transporter permease; Derived by automated computational analysis using gene prediction method: Protein Homology.
 
     0.911
OAZ12944.1
Peptide ABC transporter permease; With OppABDF is involved in the transport of oligopeptides of up to 5 amino acids into the cell; Derived by automated computational analysis using gene prediction method: Protein Homology.
 
     0.906
Your Current Organism:
Thalassospira profundimaris
NCBI taxonomy Id: 502049
Other names: CGMCC 1.3997, DSM 17430, T. profundimaris, Thalassospira profundimaris Liu et al. 2007, Thalassospira sp. 35, Thalassospira sp. MCCC 1A00350, Thalassospira sp. MCCC 1A00385, Thalassospira sp. MCCC 1A01166, Thalassospira sp. MCCC 1A01318, Thalassospira sp. MCCC 1A02030, Thalassospira sp. PR54-5, Thalassospira sp. R4-5, Thalassospira sp. R8-17, Thalassospira sp. S25-3-2, strain WP0211
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