STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
OAZ13371.1Chromosome segregation protein ScpA; Derived by automated computational analysis using gene prediction method: Protein Homology. (289 aa)    
Predicted Functional Partners:
OAZ13370.1
Transcriptional regulator; Derived by automated computational analysis using gene prediction method: Protein Homology.
 
 
 0.999
OAZ13874.1
Chromosome segregation protein SMC; Derived by automated computational analysis using gene prediction method: Protein Homology.
 
 
 0.994
OAZ13373.1
Beta-hexosaminidase; Derived by automated computational analysis using gene prediction method: Protein Homology.
  
    0.788
argS
arginyl-tRNA synthetase; Derived by automated computational analysis using gene prediction method: Protein Homology.
  
    0.782
OAZ13372.1
Peptidase M48; Derived by automated computational analysis using gene prediction method: Protein Homology.
       0.778
cmk
Cytidylate kinase; Derived by automated computational analysis using gene prediction method: Protein Homology.
 
  
 0.772
OAZ13374.1
Energy transducer TonB; Derived by automated computational analysis using gene prediction method: Protein Homology.
 
     0.738
OAZ13818.1
Pantoate--beta-alanine ligase; Derived by automated computational analysis using gene prediction method: Protein Homology.
  
    0.689
ftsE
Cell division protein FtsE; Part of the ABC transporter FtsEX involved in cellular division.
  
    0.659
OAZ13369.1
ABC transporter; Derived by automated computational analysis using gene prediction method: Protein Homology.
  
    0.615
Your Current Organism:
Thalassospira profundimaris
NCBI taxonomy Id: 502049
Other names: CGMCC 1.3997, DSM 17430, T. profundimaris, Thalassospira profundimaris Liu et al. 2007, Thalassospira sp. 35, Thalassospira sp. MCCC 1A00350, Thalassospira sp. MCCC 1A00385, Thalassospira sp. MCCC 1A01166, Thalassospira sp. MCCC 1A01318, Thalassospira sp. MCCC 1A02030, Thalassospira sp. PR54-5, Thalassospira sp. R4-5, Thalassospira sp. R8-17, Thalassospira sp. S25-3-2, strain WP0211
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