STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
OAZ12630.1Glutamine amidotransferase; Derived by automated computational analysis using gene prediction method: Protein Homology. (193 aa)    
Predicted Functional Partners:
OAZ12629.1
Arylsulfate sulfotransferase; Derived by automated computational analysis using gene prediction method: Protein Homology.
 
     0.788
rpsJ
30S ribosomal protein S10; Involved in the binding of tRNA to the ribosomes. Belongs to the universal ribosomal protein uS10 family.
  
   0.737
OAZ14117.1
Hypothetical protein; Derived by automated computational analysis using gene prediction method: Protein Homology.
   
  0.726
OAZ14749.1
Acetylpolyamine aminohydrolase; Derived by automated computational analysis using gene prediction method: Protein Homology.
    
  0.625
OAZ15310.1
Acetylpolyamine aminohydrolase; Derived by automated computational analysis using gene prediction method: Protein Homology.
    
  0.625
OAZ12692.1
Acetoin utilization protein; Derived by automated computational analysis using gene prediction method: Protein Homology.
    
  0.625
OAZ11389.1
Acetoin utilization protein; Derived by automated computational analysis using gene prediction method: Protein Homology.
    
  0.625
OAZ09619.1
Acetylpolyamine aminohydrolase; Derived by automated computational analysis using gene prediction method: Protein Homology.
    
  0.625
rplN
50S ribosomal protein L14; Binds to 23S rRNA. Forms part of two intersubunit bridges in the 70S ribosome; Belongs to the universal ribosomal protein uL14 family.
    
   0.624
OAZ14431.1
Hypothetical protein; Derived by automated computational analysis using gene prediction method: Protein Homology.
    
 0.616
Your Current Organism:
Thalassospira profundimaris
NCBI taxonomy Id: 502049
Other names: CGMCC 1.3997, DSM 17430, T. profundimaris, Thalassospira profundimaris Liu et al. 2007, Thalassospira sp. 35, Thalassospira sp. MCCC 1A00350, Thalassospira sp. MCCC 1A00385, Thalassospira sp. MCCC 1A01166, Thalassospira sp. MCCC 1A01318, Thalassospira sp. MCCC 1A02030, Thalassospira sp. PR54-5, Thalassospira sp. R4-5, Thalassospira sp. R8-17, Thalassospira sp. S25-3-2, strain WP0211
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