Export your current network:
... as a bitmap image:
file format is 'PNG': portable network graphic
... as a high-resolution bitmap:
same PNG format, but at higher resolution
... as a vector graphic:
SVG: scalable vector graphic - can be opened and edited in Illustrator, CorelDraw, Dia, etc
... as short tabular text output:
TSV: tab separated values - can be opened in Excel and Cytoscape (lists only one-way edges: A-B)
... as tabular text output:
TSV: tab separated values - can be opened in Excel (lists reciprocal edges: A-B,B-A)
... as an XML summary:
structured XML interaction data, according to the 'PSI-MI' data standard
... protein node degrees:
node degree of proteins in your network (given the current score cut-off)
... network coordinates:
a flat-file format describing the coordinates and colors of nodes in the network
... protein sequences:
MFA: multi-fasta format - containing the aminoacid sequences in the network
... protein annotations:
a tab-delimited file describing the names, domains and descriptions of proteins in your network
... functional annotations:
a tab-delimited file containing all known functional terms of protiens in your network
Browse interactions in tabular form:
node1 | node2 | node1 accession | node2 accession | node1 annotation | node2 annotation | score |
AcnA | AcrR-11 | EGYY_13970 | EGYY_13980 | Aconitase A. | Transcriptional regulator. | 0.519 |
AcnA | Smc-2 | EGYY_13970 | EGYY_13960 | Aconitase A. | Chromosome segregation ATPase. | 0.773 |
AcnA | ku | EGYY_13970 | EGYY_13950 | Aconitase A. | Uncharacterized ACR; With LigD forms a non-homologous end joining (NHEJ) DNA repair enzyme, which repairs dsDNA breaks with reduced fidelity. Binds linear dsDNA with 5'- and 3'- overhangs but not closed circular dsDNA nor ssDNA. Recruits and stimulates the ligase activity of LigD. Belongs to the prokaryotic Ku family. | 0.589 |
AcrR-11 | AcnA | EGYY_13980 | EGYY_13970 | Transcriptional regulator. | Aconitase A. | 0.519 |
AcrR-11 | Smc-2 | EGYY_13980 | EGYY_13960 | Transcriptional regulator. | Chromosome segregation ATPase. | 0.519 |
AcrR-11 | ku | EGYY_13980 | EGYY_13950 | Transcriptional regulator. | Uncharacterized ACR; With LigD forms a non-homologous end joining (NHEJ) DNA repair enzyme, which repairs dsDNA breaks with reduced fidelity. Binds linear dsDNA with 5'- and 3'- overhangs but not closed circular dsDNA nor ssDNA. Recruits and stimulates the ligase activity of LigD. Belongs to the prokaryotic Ku family. | 0.405 |
BAK45033.1 | ku | EGYY_19050 | EGYY_13950 | Hypothetical protein. | Uncharacterized ACR; With LigD forms a non-homologous end joining (NHEJ) DNA repair enzyme, which repairs dsDNA breaks with reduced fidelity. Binds linear dsDNA with 5'- and 3'- overhangs but not closed circular dsDNA nor ssDNA. Recruits and stimulates the ligase activity of LigD. Belongs to the prokaryotic Ku family. | 0.979 |
Smc-2 | AcnA | EGYY_13960 | EGYY_13970 | Chromosome segregation ATPase. | Aconitase A. | 0.773 |
Smc-2 | AcrR-11 | EGYY_13960 | EGYY_13980 | Chromosome segregation ATPase. | Transcriptional regulator. | 0.519 |
Smc-2 | ku | EGYY_13960 | EGYY_13950 | Chromosome segregation ATPase. | Uncharacterized ACR; With LigD forms a non-homologous end joining (NHEJ) DNA repair enzyme, which repairs dsDNA breaks with reduced fidelity. Binds linear dsDNA with 5'- and 3'- overhangs but not closed circular dsDNA nor ssDNA. Recruits and stimulates the ligase activity of LigD. Belongs to the prokaryotic Ku family. | 0.584 |
ku | AcnA | EGYY_13950 | EGYY_13970 | Uncharacterized ACR; With LigD forms a non-homologous end joining (NHEJ) DNA repair enzyme, which repairs dsDNA breaks with reduced fidelity. Binds linear dsDNA with 5'- and 3'- overhangs but not closed circular dsDNA nor ssDNA. Recruits and stimulates the ligase activity of LigD. Belongs to the prokaryotic Ku family. | Aconitase A. | 0.589 |
ku | AcrR-11 | EGYY_13950 | EGYY_13980 | Uncharacterized ACR; With LigD forms a non-homologous end joining (NHEJ) DNA repair enzyme, which repairs dsDNA breaks with reduced fidelity. Binds linear dsDNA with 5'- and 3'- overhangs but not closed circular dsDNA nor ssDNA. Recruits and stimulates the ligase activity of LigD. Belongs to the prokaryotic Ku family. | Transcriptional regulator. | 0.405 |
ku | BAK45033.1 | EGYY_13950 | EGYY_19050 | Uncharacterized ACR; With LigD forms a non-homologous end joining (NHEJ) DNA repair enzyme, which repairs dsDNA breaks with reduced fidelity. Binds linear dsDNA with 5'- and 3'- overhangs but not closed circular dsDNA nor ssDNA. Recruits and stimulates the ligase activity of LigD. Belongs to the prokaryotic Ku family. | Hypothetical protein. | 0.979 |
ku | Smc-2 | EGYY_13950 | EGYY_13960 | Uncharacterized ACR; With LigD forms a non-homologous end joining (NHEJ) DNA repair enzyme, which repairs dsDNA breaks with reduced fidelity. Binds linear dsDNA with 5'- and 3'- overhangs but not closed circular dsDNA nor ssDNA. Recruits and stimulates the ligase activity of LigD. Belongs to the prokaryotic Ku family. | Chromosome segregation ATPase. | 0.584 |