Export your current network:
... as a bitmap image:
file format is 'PNG': portable network graphic
... as a high-resolution bitmap:
same PNG format, but at higher resolution
... as a vector graphic:
SVG: scalable vector graphic - can be opened and edited in Illustrator, CorelDraw, Dia, etc
... as short tabular text output:
TSV: tab separated values - can be opened in Excel and Cytoscape (lists only one-way edges: A-B)
... as tabular text output:
TSV: tab separated values - can be opened in Excel (lists reciprocal edges: A-B,B-A)
... as an XML summary:
structured XML interaction data, according to the 'PSI-MI' data standard
... protein node degrees:
node degree of proteins in your network (given the current score cut-off)
... network coordinates:
a flat-file format describing the coordinates and colors of nodes in the network
... protein sequences:
MFA: multi-fasta format - containing the aminoacid sequences in the network
... protein annotations:
a tab-delimited file describing the names, domains and descriptions of proteins in your network
... functional annotations:
a tab-delimited file containing all known functional terms of protiens in your network
Browse interactions in tabular form:
node1 | node2 | node1 accession | node2 accession | node1 annotation | node2 annotation | score |
AcrR-14 | SerA | EGYY_18200 | EGYY_18210 | Transcriptional regulator. | Related dehydrogenase; Belongs to the D-isomer specific 2-hydroxyacid dehydrogenase family. | 0.727 |
BAK44967.1 | BAK45248.1 | EGYY_18320 | EGYY_21580 | Hypothetical protein. | Hypothetical protein; Belongs to the D-isomer specific 2-hydroxyacid dehydrogenase family. | 0.495 |
BAK44967.1 | BAK45318.1 | EGYY_18320 | EGYY_22440 | Hypothetical protein. | Hypothetical protein. | 0.628 |
BAK44967.1 | LeuB | EGYY_18320 | EGYY_22200 | Hypothetical protein. | Isocitrate/isopropylmalate dehydrogenase; Catalyzes the oxidation of 3-carboxy-2-hydroxy-4- methylpentanoate (3-isopropylmalate) to 3-carboxy-4-methyl-2- oxopentanoate. The product decarboxylates to 4-methyl-2 oxopentanoate. | 0.987 |
BAK44967.1 | SerA | EGYY_18320 | EGYY_18210 | Hypothetical protein. | Related dehydrogenase; Belongs to the D-isomer specific 2-hydroxyacid dehydrogenase family. | 0.559 |
BAK44967.1 | serC | EGYY_18320 | EGYY_17720 | Hypothetical protein. | Hypothetical protein; Catalyzes the reversible conversion of 3- phosphohydroxypyruvate to phosphoserine and of 3-hydroxy-2-oxo-4- phosphonooxybutanoate to phosphohydroxythreonine; Belongs to the class-V pyridoxal-phosphate-dependent aminotransferase family. SerC subfamily. | 0.495 |
BAK45248.1 | BAK44967.1 | EGYY_21580 | EGYY_18320 | Hypothetical protein; Belongs to the D-isomer specific 2-hydroxyacid dehydrogenase family. | Hypothetical protein. | 0.495 |
BAK45248.1 | BAK45318.1 | EGYY_21580 | EGYY_22440 | Hypothetical protein; Belongs to the D-isomer specific 2-hydroxyacid dehydrogenase family. | Hypothetical protein. | 0.548 |
BAK45248.1 | GlyA | EGYY_21580 | EGYY_21080 | Hypothetical protein; Belongs to the D-isomer specific 2-hydroxyacid dehydrogenase family. | Glycine hydroxymethyltransferase; Catalyzes the reversible interconversion of serine and glycine with tetrahydrofolate (THF) serving as the one-carbon carrier. This reaction serves as the major source of one-carbon groups required for the biosynthesis of purines, thymidylate, methionine, and other important biomolecules. Also exhibits THF-independent aldolase activity toward beta-hydroxyamino acids, producing glycine and aldehydes, via a retro-aldol mechanism. | 0.570 |
BAK45248.1 | LeuB | EGYY_21580 | EGYY_22200 | Hypothetical protein; Belongs to the D-isomer specific 2-hydroxyacid dehydrogenase family. | Isocitrate/isopropylmalate dehydrogenase; Catalyzes the oxidation of 3-carboxy-2-hydroxy-4- methylpentanoate (3-isopropylmalate) to 3-carboxy-4-methyl-2- oxopentanoate. The product decarboxylates to 4-methyl-2 oxopentanoate. | 0.553 |
BAK45248.1 | RplF | EGYY_21580 | EGYY_24310 | Hypothetical protein; Belongs to the D-isomer specific 2-hydroxyacid dehydrogenase family. | Ribosomal protein L6; This protein binds to the 23S rRNA, and is important in its secondary structure. It is located near the subunit interface in the base of the L7/L12 stalk, and near the tRNA binding site of the peptidyltransferase center; Belongs to the universal ribosomal protein uL6 family. | 0.582 |
BAK45248.1 | RplP | EGYY_21580 | EGYY_24390 | Hypothetical protein; Belongs to the D-isomer specific 2-hydroxyacid dehydrogenase family. | Ribosomal protein L16; Binds 23S rRNA and is also seen to make contacts with the A and possibly P site tRNAs; Belongs to the universal ribosomal protein uL16 family. | 0.593 |
BAK45248.1 | SerA | EGYY_21580 | EGYY_18210 | Hypothetical protein; Belongs to the D-isomer specific 2-hydroxyacid dehydrogenase family. | Related dehydrogenase; Belongs to the D-isomer specific 2-hydroxyacid dehydrogenase family. | 0.900 |
BAK45248.1 | gpmI | EGYY_21580 | EGYY_12930 | Hypothetical protein; Belongs to the D-isomer specific 2-hydroxyacid dehydrogenase family. | Hypothetical protein; Catalyzes the interconversion of 2-phosphoglycerate and 3- phosphoglycerate. | 0.907 |
BAK45248.1 | serC | EGYY_21580 | EGYY_17720 | Hypothetical protein; Belongs to the D-isomer specific 2-hydroxyacid dehydrogenase family. | Hypothetical protein; Catalyzes the reversible conversion of 3- phosphohydroxypyruvate to phosphoserine and of 3-hydroxy-2-oxo-4- phosphonooxybutanoate to phosphohydroxythreonine; Belongs to the class-V pyridoxal-phosphate-dependent aminotransferase family. SerC subfamily. | 0.990 |
BAK45318.1 | BAK44967.1 | EGYY_22440 | EGYY_18320 | Hypothetical protein. | Hypothetical protein. | 0.628 |
BAK45318.1 | BAK45248.1 | EGYY_22440 | EGYY_21580 | Hypothetical protein. | Hypothetical protein; Belongs to the D-isomer specific 2-hydroxyacid dehydrogenase family. | 0.548 |
BAK45318.1 | LeuB | EGYY_22440 | EGYY_22200 | Hypothetical protein. | Isocitrate/isopropylmalate dehydrogenase; Catalyzes the oxidation of 3-carboxy-2-hydroxy-4- methylpentanoate (3-isopropylmalate) to 3-carboxy-4-methyl-2- oxopentanoate. The product decarboxylates to 4-methyl-2 oxopentanoate. | 0.619 |
BAK45318.1 | SerA | EGYY_22440 | EGYY_18210 | Hypothetical protein. | Related dehydrogenase; Belongs to the D-isomer specific 2-hydroxyacid dehydrogenase family. | 0.548 |
BAK45318.1 | serC | EGYY_22440 | EGYY_17720 | Hypothetical protein. | Hypothetical protein; Catalyzes the reversible conversion of 3- phosphohydroxypyruvate to phosphoserine and of 3-hydroxy-2-oxo-4- phosphonooxybutanoate to phosphohydroxythreonine; Belongs to the class-V pyridoxal-phosphate-dependent aminotransferase family. SerC subfamily. | 0.950 |
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