STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
CitB-9Response regulator; Containing a CheY-like receiver domain,HTH DNA-binding domain. (487 aa)    
Predicted Functional Partners:
CsgD-4
DNA-binding HTH domain-containing protein.
  
     0.687
BAK45638.1
Hypothetical protein.
 
 
 0.654
BAK44456.1
Hypothetical protein.
 
 
 0.597
BAK44004.1
Hypothetical protein.
  
     0.574
BAK45326.1
Hypothetical protein.
 
 
 0.570
BaeS-2
Signal transduction histidine kinase.
   
 
 0.522
CsgD-5
DNA-binding HTH domain-containing protein.
  
     0.503
BAK45530.1
Hypothetical protein.
  
    0.491
BAK43737.1
Hypothetical protein.
 
    0.490
AraC-2
araC-type DNA-binding domain-containing protein.
 
    0.457
Your Current Organism:
Eggerthella sp. YY7918
NCBI taxonomy Id: 502558
Other names: E. sp. YY7918
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.