STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
APE27680.1Hypothetical protein; FIG00636121. (112 aa)    
Predicted Functional Partners:
APE27676.1
Hypothetical protein; FIG00985688.
  
     0.654
APE27729.1
Cell division protein FtsH; Belongs to the AAA ATPase family.
   
 0.601
dksA
C4-type zinc finger protein, DksA/TraR family; Transcription factor that acts by binding directly to the RNA polymerase (RNAP). Required for negative regulation of rRNA expression and positive regulation of several amino acid biosynthesis promoters.
       0.521
APE28788.1
Hypothetical protein.
  
     0.499
APE28567.1
Hypothetical protein.
  
     0.493
APE27030.1
Hypothetical protein.
  
 
   0.448
APE27814.1
Mannose-1-phosphate guanylyltransferase (GDP).
  
  
 0.437
APE27573.1
Hypothetical protein; FIG00635924.
  
     0.429
APE29237.1
TonB-dependent receptor.
  
     0.408
APE27116.1
Hypothetical protein; FIG00636546.
  
     0.402
Your Current Organism:
Erythrobacter gangjinensis
NCBI taxonomy Id: 502682
Other names: CGMCC 1.15024, E. gangjinensis, Erythrobacter gangjinensis Lee et al. 2010, Erythrobacter sp. K7-2, JCM 15420, KCTC 22330, strain K7-2
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.