STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
APE27964.1Phytoene synthase. (347 aa)    
Predicted Functional Partners:
APE27966.1
Phytoene dehydrogenase.
 
 
 0.994
APE28639.1
Octaprenyl diphosphate synthase / Dimethylallyltransferase / (2E,6E)-farnesyl diphosphate synthase / Geranylgeranyl diphosphate synthase; Belongs to the FPP/GGPP synthase family.
  
 0.911
APE28784.1
Hypothetical protein.
    
  0.905
APE29052.1
Farnesyltranstransferase; Octaprenyl diphosphate synthase / Dimethylallyltransferase / (2E,6E)-farnesyl diphosphate synthase / Geranylgeranyl pyrophosphate synthetase; Belongs to the FPP/GGPP synthase family.
  
 0.886
APE27967.1
Lycopene cyclase.
 
  
 0.850
APE29015.1
Undecaprenyl diphosphate synthase; Catalyzes the condensation of isopentenyl diphosphate (IPP) with allylic pyrophosphates generating different type of terpenoids.
   
 
 0.815
APE26942.1
Beta-carotene hydroxylase.
 
 
 0.725
APE27965.1
Putative lysine decarboxylase; Belongs to the LOG family.
       0.702
gapA
NADPH-dependent glyceraldehyde-3-phosphate dehydrogenase / NAD-dependent glyceraldehyde-3-phosphate dehydrogenase; Belongs to the glyceraldehyde-3-phosphate dehydrogenase family.
   
  
 0.667
APE27961.1
Methylcrotonyl-CoA carboxylase biotin-containing subunit.
       0.665
Your Current Organism:
Erythrobacter gangjinensis
NCBI taxonomy Id: 502682
Other names: CGMCC 1.15024, E. gangjinensis, Erythrobacter gangjinensis Lee et al. 2010, Erythrobacter sp. K7-2, JCM 15420, KCTC 22330, strain K7-2
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