STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
APE28943.1Hypothetical protein. (315 aa)    
Predicted Functional Partners:
APE28942.1
Hypothetical protein.
       0.686
rplF
LSU ribosomal protein L6p (L9e); This protein binds to the 23S rRNA, and is important in its secondary structure. It is located near the subunit interface in the base of the L7/L12 stalk, and near the tRNA binding site of the peptidyltransferase center; Belongs to the universal ribosomal protein uL6 family.
    
  0.685
APE28866.1
Eight transmembrane protein EpsH / EpsI protein.
    
 
 0.543
rpoZ
DNA-directed RNA polymerase omega subunit; Promotes RNA polymerase assembly. Latches the N- and C- terminal regions of the beta' subunit thereby facilitating its interaction with the beta and alpha subunits.
    
   0.514
APE28944.1
ATP-dependent RNA helicase RhlE.
   
   0.510
APE27177.1
Long-chain-fatty-acid--CoA ligase.
    
 0.501
APE27823.1
Long-chain-fatty-acid--CoA ligase; FIG022758.
    
 0.501
APE28423.1
O-succinylbenzoic acid--CoA ligase.
    
 0.501
APE28876.1
Long-chain-fatty-acid--CoA ligase.
    
 0.501
APE28985.1
1-acyl-sn-glycerol-3-phosphate acyltransferase.
    
 0.501
Your Current Organism:
Erythrobacter gangjinensis
NCBI taxonomy Id: 502682
Other names: CGMCC 1.15024, E. gangjinensis, Erythrobacter gangjinensis Lee et al. 2010, Erythrobacter sp. K7-2, JCM 15420, KCTC 22330, strain K7-2
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