PAAG_05242 protein (Paracoccidioides lutzii)

Nodes:

Network nodes represent proteins

splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.

Node Color

colored nodes:
query proteins and first shell of interactors

white nodes:
second shell of interactors

Node Content

empty nodes:
proteins of unknown 3D structure

filled nodes:
a 3D structure is known or predicted

Edges:

Edges represent protein-protein associations

associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.

Known Interactions

from curated databases

experimentally determined

Predicted Interactions

gene neighborhood

gene fusions

gene co-occurrence

Others

textmining

co-expression

protein homology

Your Input:

Neighborhood

Gene Fusion

Cooccurrence

Coexpression

Experiments

Databases

Textmining

[Homology]

Score

PAAG_05242

Uncharacterized protein. (2930 aa)

Predicted Functional Partners:

PAAG_06147

0.987

PAAG_07114

0.987

PAAG_04528

0.980

PAAG_04563

0.978

PAAG_07998

0.970

PAAG_07601

0.969

PAAG_00394

0.953

PAAG_07003

0.945

PAAG_04525

0.939

PAAG_00850

0.925

Your Current Organism:

Paracoccidioides lutzii

NCBI taxonomy Id: 502779
Other names: P. lutzii Pb01, Paracoccidioides brasiliensis Pb01, Paracoccidioides lutzii Pb01

Send network to Cytoscape

Export your current network:

... as a bitmap image:

download

file format is 'PNG': portable network graphic

... as a high-resolution bitmap:

download

same PNG format, but at higher resolution

... as a vector graphic:

download

SVG: scalable vector graphic - can be opened and edited in Illustrator, CorelDraw, Dia, etc

... as short tabular text output:

download

TSV: tab separated values - can be opened in Excel and Cytoscape (lists only one-way edges: A-B)

... as tabular text output:

download

TSV: tab separated values - can be opened in Excel (lists reciprocal edges: A-B,B-A)

... as an XML summary:

download

structured XML interaction data, according to the 'PSI-MI' data standard

... protein node degrees:

download

node degree of proteins in your network (given the current score cut-off)

... network coordinates:

download

a flat-file format describing the coordinates and colors of nodes in the network

... protein sequences:

download

MFA: multi-fasta format - containing the aminoacid sequences in the network

... protein annotations:

download

a tab-delimited file describing the names, domains and descriptions of proteins in your network

... functional annotations:

download

a tab-delimited file containing all known functional terms of protiens in your network

Browse interactions in tabular form:

node1	node2	node1 accession	node2 accession	node1 annotation	node2 annotation	score
PAAG_00394	PAAG_00850	C1GPE9	C1GQQ5	Carbamoyl-phosphate synthase arginine-specific small chain.	Glucosamine-fructose-6-phosphate aminotransferase.	0.924
PAAG_00394	PAAG_04525	C1GPE9	C1H181	Carbamoyl-phosphate synthase arginine-specific small chain.	Glutamine synthetase; Belongs to the glutamine synthetase family.	0.938
PAAG_00394	PAAG_04528	C1GPE9	C1H184	Carbamoyl-phosphate synthase arginine-specific small chain.	Acetylglutamate kinase; In the N-terminal section; belongs to the acetylglutamate kinase family.	0.980
PAAG_00394	PAAG_04563	C1GPE9	C1H1B9	Carbamoyl-phosphate synthase arginine-specific small chain.	Amidophosphoribosyltransferase.	0.969
PAAG_00394	PAAG_05242	C1GPE9	C1H399	Carbamoyl-phosphate synthase arginine-specific small chain.	Uncharacterized protein.	0.953
PAAG_00394	PAAG_06147	C1GPE9	C1H637	Carbamoyl-phosphate synthase arginine-specific small chain.	Dihydroorotase.	0.811
PAAG_00394	PAAG_07003	C1GPE9	C1H826	Carbamoyl-phosphate synthase arginine-specific small chain.	Glutamine synthetase.	0.954
PAAG_00394	PAAG_07114	C1GPE9	C1H8M3	Carbamoyl-phosphate synthase arginine-specific small chain.	Argininosuccinate synthase.	0.974
PAAG_00394	PAAG_07601	C1GPE9	C1HAE7	Carbamoyl-phosphate synthase arginine-specific small chain.	Ornithine carbamoyltransferase; Belongs to the aspartate/ornithine carbamoyltransferase superfamily.	0.956
PAAG_00394	PAAG_07998	C1GPE9	A0A0A2V3X1	Carbamoyl-phosphate synthase arginine-specific small chain.	Glutamine amidotransferase type-2 domain-containing protein.	0.970
PAAG_00850	PAAG_00394	C1GQQ5	C1GPE9	Glucosamine-fructose-6-phosphate aminotransferase.	Carbamoyl-phosphate synthase arginine-specific small chain.	0.924
PAAG_00850	PAAG_04525	C1GQQ5	C1H181	Glucosamine-fructose-6-phosphate aminotransferase.	Glutamine synthetase; Belongs to the glutamine synthetase family.	0.941
PAAG_00850	PAAG_04528	C1GQQ5	C1H184	Glucosamine-fructose-6-phosphate aminotransferase.	Acetylglutamate kinase; In the N-terminal section; belongs to the acetylglutamate kinase family.	0.637
PAAG_00850	PAAG_04563	C1GQQ5	C1H1B9	Glucosamine-fructose-6-phosphate aminotransferase.	Amidophosphoribosyltransferase.	0.926
PAAG_00850	PAAG_05242	C1GQQ5	C1H399	Glucosamine-fructose-6-phosphate aminotransferase.	Uncharacterized protein.	0.925
PAAG_00850	PAAG_07003	C1GQQ5	C1H826	Glucosamine-fructose-6-phosphate aminotransferase.	Glutamine synthetase.	0.944
PAAG_00850	PAAG_07998	C1GQQ5	A0A0A2V3X1	Glucosamine-fructose-6-phosphate aminotransferase.	Glutamine amidotransferase type-2 domain-containing protein.	0.927
PAAG_04525	PAAG_00394	C1H181	C1GPE9	Glutamine synthetase; Belongs to the glutamine synthetase family.	Carbamoyl-phosphate synthase arginine-specific small chain.	0.938
PAAG_04525	PAAG_00850	C1H181	C1GQQ5	Glutamine synthetase; Belongs to the glutamine synthetase family.	Glucosamine-fructose-6-phosphate aminotransferase.	0.941
PAAG_04525	PAAG_04528	C1H181	C1H184	Glutamine synthetase; Belongs to the glutamine synthetase family.	Acetylglutamate kinase; In the N-terminal section; belongs to the acetylglutamate kinase family.	0.700