PAAG_07847 protein (Paracoccidioides lutzii)

Nodes:

Network nodes represent proteins

splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.

Node Color

colored nodes:
query proteins and first shell of interactors

white nodes:
second shell of interactors

Node Content

empty nodes:
proteins of unknown 3D structure

filled nodes:
a 3D structure is known or predicted

Edges:

Edges represent protein-protein associations

associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.

Known Interactions

from curated databases

experimentally determined

Predicted Interactions

gene neighborhood

gene fusions

gene co-occurrence

Others

textmining

co-expression

protein homology

Your Input:

Neighborhood

Gene Fusion

Cooccurrence

Coexpression

Experiments

Databases

Textmining

[Homology]

Score

PAAG_07847

40S ribosomal protein S26; Belongs to the eukaryotic ribosomal protein eS26 family. (121 aa)

Predicted Functional Partners:

PAAG_01099

0.999

PAAG_00238

0.999

PAAG_00548

0.999

PAAG_00088

0.999

PAAG_00205

0.999

PAAG_00206

0.999

PAAG_00347

0.999

PAAG_00385

0.999

PAAG_00430

0.999

PAAG_00648

0.999

Your Current Organism:

Paracoccidioides lutzii

NCBI taxonomy Id: 502779
Other names: P. lutzii Pb01, Paracoccidioides brasiliensis Pb01, Paracoccidioides lutzii Pb01

Send network to Cytoscape

Export your current network:

... as a bitmap image:

download

file format is 'PNG': portable network graphic

... as a high-resolution bitmap:

download

same PNG format, but at higher resolution

... as a vector graphic:

download

SVG: scalable vector graphic - can be opened and edited in Illustrator, CorelDraw, Dia, etc

... as short tabular text output:

download

TSV: tab separated values - can be opened in Excel and Cytoscape (lists only one-way edges: A-B)

... as tabular text output:

download

TSV: tab separated values - can be opened in Excel (lists reciprocal edges: A-B,B-A)

... as an XML summary:

download

structured XML interaction data, according to the 'PSI-MI' data standard

... protein node degrees:

download

node degree of proteins in your network (given the current score cut-off)

... network coordinates:

download

a flat-file format describing the coordinates and colors of nodes in the network

... protein sequences:

download

MFA: multi-fasta format - containing the aminoacid sequences in the network

... protein annotations:

download

a tab-delimited file describing the names, domains and descriptions of proteins in your network

... functional annotations:

download

a tab-delimited file containing all known functional terms of protiens in your network

Browse interactions in tabular form:

node1	node2	node1 accession	node2 accession	node1 annotation	node2 annotation	score
PAAG_00088	PAAG_00205	C1GNJ3	C1GNW0	60S ribosomal protein L3; Belongs to the universal ribosomal protein uL3 family.	Uncharacterized protein.	0.999
PAAG_00088	PAAG_00206	C1GNJ3	C1GNW1	60S ribosomal protein L3; Belongs to the universal ribosomal protein uL3 family.	40S ribosomal protein S30; Belongs to the eukaryotic ribosomal protein eS30 family.	0.992
PAAG_00088	PAAG_00238	C1GNJ3	A0A0A2V3S0	60S ribosomal protein L3; Belongs to the universal ribosomal protein uL3 family.	Ubiquitin-60S ribosomal protein L40.	0.997
PAAG_00088	PAAG_00347	C1GNJ3	C1GPA2	60S ribosomal protein L3; Belongs to the universal ribosomal protein uL3 family.	60S ribosomal protein L9-B.	0.999
PAAG_00088	PAAG_00385	C1GNJ3	C1GPE0	60S ribosomal protein L3; Belongs to the universal ribosomal protein uL3 family.	40S ribosomal protein S23; Belongs to the universal ribosomal protein uS12 family.	0.999
PAAG_00088	PAAG_00430	C1GNJ3	C1GPI5	60S ribosomal protein L3; Belongs to the universal ribosomal protein uL3 family.	60S ribosomal protein L2.	0.999
PAAG_00088	PAAG_00548	C1GNJ3	A0A0A2V7Y7	60S ribosomal protein L3; Belongs to the universal ribosomal protein uL3 family.	60S ribosomal protein L5.	0.999
PAAG_00088	PAAG_00648	C1GNJ3	C1GQ53	60S ribosomal protein L3; Belongs to the universal ribosomal protein uL3 family.	60S ribosomal protein L33-B.	0.999
PAAG_00088	PAAG_01099	C1GNJ3	A0A0A2V2K7	60S ribosomal protein L3; Belongs to the universal ribosomal protein uL3 family.	Zn(2)-C6 fungal-type domain-containing protein.	0.999
PAAG_00088	PAAG_07847	C1GNJ3	C1HAY3	60S ribosomal protein L3; Belongs to the universal ribosomal protein uL3 family.	40S ribosomal protein S26; Belongs to the eukaryotic ribosomal protein eS26 family.	0.999
PAAG_00205	PAAG_00088	C1GNW0	C1GNJ3	Uncharacterized protein.	60S ribosomal protein L3; Belongs to the universal ribosomal protein uL3 family.	0.999
PAAG_00205	PAAG_00206	C1GNW0	C1GNW1	Uncharacterized protein.	40S ribosomal protein S30; Belongs to the eukaryotic ribosomal protein eS30 family.	0.999
PAAG_00205	PAAG_00238	C1GNW0	A0A0A2V3S0	Uncharacterized protein.	Ubiquitin-60S ribosomal protein L40.	0.999
PAAG_00205	PAAG_00347	C1GNW0	C1GPA2	Uncharacterized protein.	60S ribosomal protein L9-B.	0.999
PAAG_00205	PAAG_00385	C1GNW0	C1GPE0	Uncharacterized protein.	40S ribosomal protein S23; Belongs to the universal ribosomal protein uS12 family.	0.999
PAAG_00205	PAAG_00430	C1GNW0	C1GPI5	Uncharacterized protein.	60S ribosomal protein L2.	0.999
PAAG_00205	PAAG_00548	C1GNW0	A0A0A2V7Y7	Uncharacterized protein.	60S ribosomal protein L5.	0.999
PAAG_00205	PAAG_00648	C1GNW0	C1GQ53	Uncharacterized protein.	60S ribosomal protein L33-B.	0.999
PAAG_00205	PAAG_01099	C1GNW0	A0A0A2V2K7	Uncharacterized protein.	Zn(2)-C6 fungal-type domain-containing protein.	0.999
PAAG_00205	PAAG_07847	C1GNW0	C1HAY3	Uncharacterized protein.	40S ribosomal protein S26; Belongs to the eukaryotic ribosomal protein eS26 family.	0.999