PAAG_08112 protein (Paracoccidioides lutzii)

Nodes:

Network nodes represent proteins

splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.

Node Color

colored nodes:
query proteins and first shell of interactors

white nodes:
second shell of interactors

Node Content

empty nodes:
proteins of unknown 3D structure

filled nodes:
a 3D structure is known or predicted

Edges:

Edges represent protein-protein associations

associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.

Known Interactions

from curated databases

experimentally determined

Predicted Interactions

gene neighborhood

gene fusions

gene co-occurrence

Others

textmining

co-expression

protein homology

Your Input:

Neighborhood

Gene Fusion

Cooccurrence

Coexpression

Experiments

Databases

Textmining

[Homology]

Score

PAAG_08112

Uncharacterized protein. (784 aa)

Predicted Functional Partners:

PAAG_08833

0.939

PAAG_07828

0.798

PAAG_02506

0.543

PAAG_02506-3

0.543

PAAG_06493

0.543

PAAG_02589

0.462

PAAG_08685

0.462

PAAG_02282

0.458

PAAG_07790

0.457

PAAG_00244

0.431

Your Current Organism:

Paracoccidioides lutzii

NCBI taxonomy Id: 502779
Other names: P. lutzii Pb01, Paracoccidioides brasiliensis Pb01, Paracoccidioides lutzii Pb01

Send network to Cytoscape

Export your current network:

... as a bitmap image:

download

file format is 'PNG': portable network graphic

... as a high-resolution bitmap:

download

same PNG format, but at higher resolution

... as a vector graphic:

download

SVG: scalable vector graphic - can be opened and edited in Illustrator, CorelDraw, Dia, etc

... as short tabular text output:

download

TSV: tab separated values - can be opened in Excel and Cytoscape (lists only one-way edges: A-B)

... as tabular text output:

download

TSV: tab separated values - can be opened in Excel (lists reciprocal edges: A-B,B-A)

... as an XML summary:

download

structured XML interaction data, according to the 'PSI-MI' data standard

... protein node degrees:

download

node degree of proteins in your network (given the current score cut-off)

... network coordinates:

download

a flat-file format describing the coordinates and colors of nodes in the network

... protein sequences:

download

MFA: multi-fasta format - containing the aminoacid sequences in the network

... protein annotations:

download

a tab-delimited file describing the names, domains and descriptions of proteins in your network

... functional annotations:

download

a tab-delimited file containing all known functional terms of protiens in your network

Browse interactions in tabular form:

node1	node2	node1 accession	node2 accession	node1 annotation	node2 annotation	score
PAAG_00244	PAAG_02282	C1GNZ9	C1GVK5	Polyadenylate-binding protein; Binds the poly(A) tail of mRNA. Belongs to the polyadenylate-binding protein type-1 family.	PAT1 domain-containing protein.	0.485
PAAG_00244	PAAG_07828	C1GNZ9	C1HA99	Polyadenylate-binding protein; Binds the poly(A) tail of mRNA. Belongs to the polyadenylate-binding protein type-1 family.	Uncharacterized protein.	0.569
PAAG_00244	PAAG_08112	C1GNZ9	C1HBH1	Polyadenylate-binding protein; Binds the poly(A) tail of mRNA. Belongs to the polyadenylate-binding protein type-1 family.	Uncharacterized protein.	0.431
PAAG_00244	PAAG_08833	C1GNZ9	C1HDJ2	Polyadenylate-binding protein; Binds the poly(A) tail of mRNA. Belongs to the polyadenylate-binding protein type-1 family.	ATP-dependent RNA helicase DHH1; Belongs to the DEAD box helicase family.	0.834
PAAG_02282	PAAG_00244	C1GVK5	C1GNZ9	PAT1 domain-containing protein.	Polyadenylate-binding protein; Binds the poly(A) tail of mRNA. Belongs to the polyadenylate-binding protein type-1 family.	0.485
PAAG_02282	PAAG_02506	C1GVK5	A0A0A2V1Y0	PAT1 domain-containing protein.	Uncharacterized protein.	0.903
PAAG_02282	PAAG_02506-3	C1GVK5	A0A0A2V6Q3	PAT1 domain-containing protein.	Nudix hydrolase domain-containing protein.	0.953
PAAG_02282	PAAG_02589	C1GVK5	C1GVB6	PAT1 domain-containing protein.	YjeF_N domain-containing protein.	0.814
PAAG_02282	PAAG_06493	C1GVK5	C1H6V2	PAT1 domain-containing protein.	Uncharacterized protein.	0.953
PAAG_02282	PAAG_07828	C1GVK5	C1HA99	PAT1 domain-containing protein.	Uncharacterized protein.	0.970
PAAG_02282	PAAG_08112	C1GVK5	C1HBH1	PAT1 domain-containing protein.	Uncharacterized protein.	0.458
PAAG_02282	PAAG_08685	C1GVK5	C1HD44	PAT1 domain-containing protein.	NAD(P)H-hydrate epimerase; Catalyzes the epimerization of the S- and R-forms of NAD(P)HX, a damaged form of NAD(P)H that is a result of enzymatic or heat-dependent hydration. This is a prerequisite for the S-specific NAD(P)H-hydrate dehydratase to allow the repair of both epimers of NAD(P)HX.	0.814
PAAG_02282	PAAG_08833	C1GVK5	C1HDJ2	PAT1 domain-containing protein.	ATP-dependent RNA helicase DHH1; Belongs to the DEAD box helicase family.	0.998
PAAG_02506	PAAG_02282	A0A0A2V1Y0	C1GVK5	Uncharacterized protein.	PAT1 domain-containing protein.	0.903
PAAG_02506	PAAG_02506-3	A0A0A2V1Y0	A0A0A2V6Q3	Uncharacterized protein.	Nudix hydrolase domain-containing protein.	0.900
PAAG_02506	PAAG_02589	A0A0A2V1Y0	C1GVB6	Uncharacterized protein.	YjeF_N domain-containing protein.	0.773
PAAG_02506	PAAG_07828	A0A0A2V1Y0	C1HA99	Uncharacterized protein.	Uncharacterized protein.	0.906
PAAG_02506	PAAG_08112	A0A0A2V1Y0	C1HBH1	Uncharacterized protein.	Uncharacterized protein.	0.543
PAAG_02506	PAAG_08685	A0A0A2V1Y0	C1HD44	Uncharacterized protein.	NAD(P)H-hydrate epimerase; Catalyzes the epimerization of the S- and R-forms of NAD(P)HX, a damaged form of NAD(P)H that is a result of enzymatic or heat-dependent hydration. This is a prerequisite for the S-specific NAD(P)H-hydrate dehydratase to allow the repair of both epimers of NAD(P)HX.	0.773
PAAG_02506	PAAG_08833	A0A0A2V1Y0	C1HDJ2	Uncharacterized protein.	ATP-dependent RNA helicase DHH1; Belongs to the DEAD box helicase family.	0.862