STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
B2J93_2299NUDIX domain-containing protein. (261 aa)    
Predicted Functional Partners:
B2J93_2041
Mitochondrial-processing peptidase subunit alpha; Belongs to the peptidase M16 family.
   
   0.836
B2J93_4458
Uncharacterized protein.
    
 0.818
B2J93_2592
PAT1 domain-containing protein.
    
 0.782
B2J93_8012
5'-3' exoribonuclease 1; Multifunctional protein that exhibits several independent functions at different levels of the cellular processes. 5'-3' exonuclease component of the nonsense-mediated mRNA decay (NMD) which is a highly conserved mRNA degradation pathway, an RNA surveillance system whose role is to identify and rid cells of mRNA with premature termination codons and thus prevents accumulation of potentially harmful truncated proteins.
    
 0.754
B2J93_3649
TPR_REGION domain-containing protein.
     
 0.728
B2J93_7527
Sm domain-containing protein.
    
 0.718
B2J93_1813
Pex2_Pex12 domain-containing protein.
   
 
 0.717
B2J93_351
YjeF N-terminal domain-containing protein.
   
 0.715
B2J93_2660
Pex14_N domain-containing protein.
     
 0.710
B2J93_4003
SH3 domain-containing protein.
     
 0.709
Your Current Organism:
Marssonina coronariae
NCBI taxonomy Id: 503106
Other names: M. coronariae
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