STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
B2J93_5402Uncharacterized protein. (774 aa)    
Predicted Functional Partners:
B2J93_5017
Uncharacterized protein.
   
 0.997
B2J93_2810
RRM domain-containing protein.
   
 
 0.990
B2J93_8515
U1 small nuclear ribonucleoprotein C; Component of the spliceosomal U1 snRNP, which is essential for recognition of the pre-mRNA 5' splice-site and the subsequent assembly of the spliceosome. U1-C is directly involved in initial 5' splice-site recognition for both constitutive and regulated alternative splicing. The interaction with the 5' splice-site seems to precede base-pairing between the pre-mRNA and the U1 snRNA. Stimulates commitment or early (E) complex formation by stabilizing the base pairing of the 5' end of the U1 snRNA and the 5' splice-site region.
   
 
 0.990
B2J93_3203
Uncharacterized protein.
   
 
 0.987
B2J93_8261
Nuclear cap-binding protein subunit 2.
   
 
 0.986
B2J93_9195
Uncharacterized protein.
   
 
 0.978
B2J93_4246
Uncharacterized protein.
   
 0.971
B2J93_4614
PWI domain-containing protein.
   
 0.966
B2J93_7382
Pre-mRNA-splicing factor rse.
    
 
 0.965
B2J93_2621
Uncharacterized protein.
   
 
 0.958
Your Current Organism:
Marssonina coronariae
NCBI taxonomy Id: 503106
Other names: M. coronariae
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.