Export your current network:
... as a bitmap image:
file format is 'PNG': portable network graphic
... as a high-resolution bitmap:
same PNG format, but at higher resolution
... as a vector graphic:
SVG: scalable vector graphic - can be opened and edited in Illustrator, CorelDraw, Dia, etc
... as short tabular text output:
TSV: tab separated values - can be opened in Excel and Cytoscape (lists only one-way edges: A-B)
... as tabular text output:
TSV: tab separated values - can be opened in Excel (lists reciprocal edges: A-B,B-A)
... as an XML summary:
structured XML interaction data, according to the 'PSI-MI' data standard
... protein node degrees:
node degree of proteins in your network (given the current score cut-off)
... network coordinates:
a flat-file format describing the coordinates and colors of nodes in the network
... protein sequences:
MFA: multi-fasta format - containing the aminoacid sequences in the network
... protein annotations:
a tab-delimited file describing the names, domains and descriptions of proteins in your network
... functional annotations:
a tab-delimited file containing all known functional terms of protiens in your network
Browse interactions in tabular form:
node1 | node2 | node1 accession | node2 accession | node1 annotation | node2 annotation | score |
B2J93_1158 | B2J93_1539 | A0A218YWZ3 | A0A218Z227 | RRM domain-containing protein. | PAB-dependent poly(A)-specific ribonuclease subunit PAN. | 0.662 |
B2J93_1158 | B2J93_2775 | A0A218YWZ3 | A0A218Z269 | RRM domain-containing protein. | Polyadenylate-binding protein; Binds the poly(A) tail of mRNA. Belongs to the polyadenylate-binding protein type-1 family. | 0.910 |
B2J93_1158 | B2J93_4085 | A0A218YWZ3 | A0A218ZB93 | RRM domain-containing protein. | RRM domain-containing protein. | 0.668 |
B2J93_1158 | B2J93_4608 | A0A218YWZ3 | A0A218Z2L8 | RRM domain-containing protein. | Eukaryotic initiation factor 4A; Belongs to the DEAD box helicase family. | 0.976 |
B2J93_1158 | B2J93_7377 | A0A218YWZ3 | A0A218Z5M0 | RRM domain-containing protein. | Endo/exonuclease/phosphatase domain-containing protein. | 0.574 |
B2J93_1158 | B2J93_9049 | A0A218YWZ3 | A0A218Z697 | RRM domain-containing protein. | Uncharacterized protein; Belongs to the eukaryotic initiation factor 4E family. | 0.930 |
B2J93_1158 | B2J93_9393 | A0A218YWZ3 | A0A218ZAL5 | RRM domain-containing protein. | Eukaryotic initiation factor 4A; Belongs to the DEAD box helicase family. | 0.842 |
B2J93_1158 | PAN3 | A0A218YWZ3 | A0A218Z1M4 | RRM domain-containing protein. | PAN2-PAN3 deadenylation complex subunit PAN3; Regulatory subunit of the poly(A)-nuclease (PAN) deadenylation complex, one of two cytoplasmic mRNA deadenylases involved in mRNA turnover. PAN specifically shortens poly(A) tails of RNA and the activity is stimulated by poly(A)-binding protein PAB1. PAN deadenylation is followed by rapid degradation of the shortened mRNA tails by the CCR4-NOT complex. Deadenylated mRNAs are then degraded by two alternative mechanisms, namely exosome-mediated 3'-5' exonucleolytic degradation, or deadenlyation-dependent mRNA decaping and subsequent 5'-3' exo [...] | 0.640 |
B2J93_1539 | B2J93_1158 | A0A218Z227 | A0A218YWZ3 | PAB-dependent poly(A)-specific ribonuclease subunit PAN. | RRM domain-containing protein. | 0.662 |
B2J93_1539 | B2J93_2626 | A0A218Z227 | A0A218Z6R9 | PAB-dependent poly(A)-specific ribonuclease subunit PAN. | Vezatin domain-containing protein. | 0.662 |
B2J93_1539 | B2J93_2775 | A0A218Z227 | A0A218Z269 | PAB-dependent poly(A)-specific ribonuclease subunit PAN. | Polyadenylate-binding protein; Binds the poly(A) tail of mRNA. Belongs to the polyadenylate-binding protein type-1 family. | 0.980 |
B2J93_1539 | B2J93_4085 | A0A218Z227 | A0A218ZB93 | PAB-dependent poly(A)-specific ribonuclease subunit PAN. | RRM domain-containing protein. | 0.928 |
B2J93_1539 | B2J93_4608 | A0A218Z227 | A0A218Z2L8 | PAB-dependent poly(A)-specific ribonuclease subunit PAN. | Eukaryotic initiation factor 4A; Belongs to the DEAD box helicase family. | 0.739 |
B2J93_1539 | B2J93_7377 | A0A218Z227 | A0A218Z5M0 | PAB-dependent poly(A)-specific ribonuclease subunit PAN. | Endo/exonuclease/phosphatase domain-containing protein. | 0.761 |
B2J93_1539 | B2J93_765 | A0A218Z227 | A0A218YYF4 | PAB-dependent poly(A)-specific ribonuclease subunit PAN. | 60S ribosomal protein L. | 0.671 |
B2J93_1539 | B2J93_9049 | A0A218Z227 | A0A218Z697 | PAB-dependent poly(A)-specific ribonuclease subunit PAN. | Uncharacterized protein; Belongs to the eukaryotic initiation factor 4E family. | 0.671 |
B2J93_1539 | B2J93_9393 | A0A218Z227 | A0A218ZAL5 | PAB-dependent poly(A)-specific ribonuclease subunit PAN. | Eukaryotic initiation factor 4A; Belongs to the DEAD box helicase family. | 0.710 |
B2J93_1539 | PAN3 | A0A218Z227 | A0A218Z1M4 | PAB-dependent poly(A)-specific ribonuclease subunit PAN. | PAN2-PAN3 deadenylation complex subunit PAN3; Regulatory subunit of the poly(A)-nuclease (PAN) deadenylation complex, one of two cytoplasmic mRNA deadenylases involved in mRNA turnover. PAN specifically shortens poly(A) tails of RNA and the activity is stimulated by poly(A)-binding protein PAB1. PAN deadenylation is followed by rapid degradation of the shortened mRNA tails by the CCR4-NOT complex. Deadenylated mRNAs are then degraded by two alternative mechanisms, namely exosome-mediated 3'-5' exonucleolytic degradation, or deadenlyation-dependent mRNA decaping and subsequent 5'-3' exo [...] | 0.998 |
B2J93_2626 | B2J93_1539 | A0A218Z6R9 | A0A218Z227 | Vezatin domain-containing protein. | PAB-dependent poly(A)-specific ribonuclease subunit PAN. | 0.662 |
B2J93_2775 | B2J93_1158 | A0A218Z269 | A0A218YWZ3 | Polyadenylate-binding protein; Binds the poly(A) tail of mRNA. Belongs to the polyadenylate-binding protein type-1 family. | RRM domain-containing protein. | 0.910 |
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