Export your current network:
... as a bitmap image:
file format is 'PNG': portable network graphic
... as a high-resolution bitmap:
same PNG format, but at higher resolution
... as a vector graphic:
SVG: scalable vector graphic - can be opened and edited in Illustrator, CorelDraw, Dia, etc
... as short tabular text output:
TSV: tab separated values - can be opened in Excel and Cytoscape (lists only one-way edges: A-B)
... as tabular text output:
TSV: tab separated values - can be opened in Excel (lists reciprocal edges: A-B,B-A)
... as an XML summary:
structured XML interaction data, according to the 'PSI-MI' data standard
... protein node degrees:
node degree of proteins in your network (given the current score cut-off)
... network coordinates:
a flat-file format describing the coordinates and colors of nodes in the network
... protein sequences:
MFA: multi-fasta format - containing the aminoacid sequences in the network
... protein annotations:
a tab-delimited file describing the names, domains and descriptions of proteins in your network
... functional annotations:
a tab-delimited file containing all known functional terms of protiens in your network
Browse interactions in tabular form:
node1 | node2 | node1 accession | node2 accession | node1 annotation | node2 annotation | score |
B2J93_1037 | B2J93_1323 | A0A218Z2G9 | A0A218YZD1 | Uncharacterized protein. | LSM domain-containing protein. | 0.994 |
B2J93_1037 | B2J93_2635 | A0A218Z2G9 | A0A218Z855 | Uncharacterized protein. | Small nuclear ribonucleoprotein Sm D1; Involved in pre-mRNA splicing. Binds snRNA U1, U2, U4 and U5 which contain a highly conserved structural motif called the Sm binding site; Belongs to the snRNP core protein family. | 0.995 |
B2J93_1037 | B2J93_2810 | A0A218Z2G9 | A0A218Z1A0 | Uncharacterized protein. | RRM domain-containing protein. | 0.980 |
B2J93_1037 | B2J93_4324 | A0A218Z2G9 | A0A218ZF78 | Uncharacterized protein. | Small nuclear ribonucleoprotein Sm D2. | 0.995 |
B2J93_1037 | B2J93_5456 | A0A218Z2G9 | A0A218Z1R2 | Uncharacterized protein. | Sm domain-containing protein. | 0.979 |
B2J93_1037 | B2J93_7483 | A0A218Z2G9 | A0A218Z887 | Uncharacterized protein. | Small nuclear ribonucleoprotein E; Associated with the spliceosome snRNP U1, U2, U4/U6 and U5. Belongs to the snRNP Sm proteins family. | 0.994 |
B2J93_1037 | B2J93_7924 | A0A218Z2G9 | A0A218Z8G5 | Uncharacterized protein. | Small nuclear ribonucleoprotein G. | 0.995 |
B2J93_1037 | B2J93_8261 | A0A218Z2G9 | A0A218YTU8 | Uncharacterized protein. | Nuclear cap-binding protein subunit 2. | 0.979 |
B2J93_1037 | B2J93_8515 | A0A218Z2G9 | A0A218ZEG1 | Uncharacterized protein. | U1 small nuclear ribonucleoprotein C; Component of the spliceosomal U1 snRNP, which is essential for recognition of the pre-mRNA 5' splice-site and the subsequent assembly of the spliceosome. U1-C is directly involved in initial 5' splice-site recognition for both constitutive and regulated alternative splicing. The interaction with the 5' splice-site seems to precede base-pairing between the pre-mRNA and the U1 snRNA. Stimulates commitment or early (E) complex formation by stabilizing the base pairing of the 5' end of the U1 snRNA and the 5' splice-site region. | 0.985 |
B2J93_1037 | B2J93_9014 | A0A218Z2G9 | A0A218ZIB3 | Uncharacterized protein. | Small nuclear ribonucleoprotein. | 0.984 |
B2J93_1323 | B2J93_1037 | A0A218YZD1 | A0A218Z2G9 | LSM domain-containing protein. | Uncharacterized protein. | 0.994 |
B2J93_1323 | B2J93_2635 | A0A218YZD1 | A0A218Z855 | LSM domain-containing protein. | Small nuclear ribonucleoprotein Sm D1; Involved in pre-mRNA splicing. Binds snRNA U1, U2, U4 and U5 which contain a highly conserved structural motif called the Sm binding site; Belongs to the snRNP core protein family. | 0.999 |
B2J93_1323 | B2J93_2810 | A0A218YZD1 | A0A218Z1A0 | LSM domain-containing protein. | RRM domain-containing protein. | 0.992 |
B2J93_1323 | B2J93_4324 | A0A218YZD1 | A0A218ZF78 | LSM domain-containing protein. | Small nuclear ribonucleoprotein Sm D2. | 0.999 |
B2J93_1323 | B2J93_5456 | A0A218YZD1 | A0A218Z1R2 | LSM domain-containing protein. | Sm domain-containing protein. | 0.989 |
B2J93_1323 | B2J93_7483 | A0A218YZD1 | A0A218Z887 | LSM domain-containing protein. | Small nuclear ribonucleoprotein E; Associated with the spliceosome snRNP U1, U2, U4/U6 and U5. Belongs to the snRNP Sm proteins family. | 0.999 |
B2J93_1323 | B2J93_7924 | A0A218YZD1 | A0A218Z8G5 | LSM domain-containing protein. | Small nuclear ribonucleoprotein G. | 0.999 |
B2J93_1323 | B2J93_8261 | A0A218YZD1 | A0A218YTU8 | LSM domain-containing protein. | Nuclear cap-binding protein subunit 2. | 0.994 |
B2J93_1323 | B2J93_8515 | A0A218YZD1 | A0A218ZEG1 | LSM domain-containing protein. | U1 small nuclear ribonucleoprotein C; Component of the spliceosomal U1 snRNP, which is essential for recognition of the pre-mRNA 5' splice-site and the subsequent assembly of the spliceosome. U1-C is directly involved in initial 5' splice-site recognition for both constitutive and regulated alternative splicing. The interaction with the 5' splice-site seems to precede base-pairing between the pre-mRNA and the U1 snRNA. Stimulates commitment or early (E) complex formation by stabilizing the base pairing of the 5' end of the U1 snRNA and the 5' splice-site region. | 0.991 |
B2J93_1323 | B2J93_9014 | A0A218YZD1 | A0A218ZIB3 | LSM domain-containing protein. | Small nuclear ribonucleoprotein. | 0.998 |
page 1 of 6