STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
B2J93_3614Uncharacterized protein. (508 aa)    
Predicted Functional Partners:
B2J93_4913
Nop domain-containing protein.
   
 
 0.991
B2J93_9524
Uncharacterized protein.
   
 
 0.991
B2J93_6802
Uncharacterized protein; Belongs to the DEAD box helicase family.
   
 
 0.948
B2J93_7277
G-patch domain-containing protein.
   
 
 0.935
B2J93_3597
RRM domain-containing protein.
   
   0.928
B2J93_6869
Centromere/microtubule binding protein CBF.
   
 
 0.915
B2J93_904
CP-type G domain-containing protein.
   
 
 0.913
B2J93_4929
H/ACA ribonucleoprotein complex subunit; Required for ribosome biogenesis. Part of a complex which catalyzes pseudouridylation of rRNA. This involves the isomerization of uridine such that the ribose is subsequently attached to C5, instead of the normal N1. Pseudouridine ("psi") residues may serve to stabilize the conformation of rRNAs.
   
 
 0.911
B2J93_7497
Nucleolar GTP-binding protein 1; Involved in the biogenesis of the 60S ribosomal subunit. Belongs to the TRAFAC class OBG-HflX-like GTPase superfamily. OBG GTPase family. NOG subfamily.
   
   0.905
B2J93_1655
Nop domain-containing protein.
   
 
 0.905
Your Current Organism:
Marssonina coronariae
NCBI taxonomy Id: 503106
Other names: M. coronariae
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