STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
B2J93_6453RAI1 domain-containing protein. (414 aa)    
Predicted Functional Partners:
B2J93_3414
5'-3' exoribonuclease; Possesses 5'->3' exoribonuclease activity. May promote termination of transcription by RNA polymerase II.
   
 
 0.990
B2J93_3723
DUF618 domain-containing protein.
    
 
 0.964
B2J93_4291
RNase_PH domain-containing protein.
   
   0.924
B2J93_8012
5'-3' exoribonuclease 1; Multifunctional protein that exhibits several independent functions at different levels of the cellular processes. 5'-3' exonuclease component of the nonsense-mediated mRNA decay (NMD) which is a highly conserved mRNA degradation pathway, an RNA surveillance system whose role is to identify and rid cells of mRNA with premature termination codons and thus prevents accumulation of potentially harmful truncated proteins.
    
 
 0.623
B2J93_1381
CLP1_P domain-containing protein.
   
 
 0.540
B2J93_1382
Uncharacterized protein.
   
 
 0.540
B2J93_8253
Uncharacterized protein.
   
 
 0.503
B2J93_9162
mRNA cap guanine-N7 methyltransferase.
    
 
 0.502
B2J93_3807
RNase_PH domain-containing protein.
   
   0.478
B2J93_5318
RRM domain-containing protein.
   
 
 0.445
Your Current Organism:
Marssonina coronariae
NCBI taxonomy Id: 503106
Other names: M. coronariae
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