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STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
lolAPeriplasmic chaperone LolA; Participates in the translocation of lipoproteins from the inner membrane to the outer membrane. Only forms a complex with a lipoprotein if the residue after the N-terminal Cys is not an aspartate (The Asp acts as a targeting signal to indicate that the lipoprotein should stay in the inner membrane). (207 aa)    
Predicted Functional Partners:
KPA88924.1
PFAM: MacB-like periplasmic core domain; FtsX-like permease family; 'TIGRFAM: lipoprotein releasing system, transmembrane protein, LolC/E family'.
 
 
 
 0.948
KPA88922.1
PFAM: MacB-like periplasmic core domain; FtsX-like permease family; 'TIGRFAM: lipoprotein releasing system, transmembrane protein, LolC/E family'.
 
 
 
 0.944
lolD
Lipoprotein releasing system, ATP-binding protein; Part of the ABC transporter complex LolCDE involved in the translocation of lipoproteins, in an ATP-dependent manner.
 
 
 
 0.908
lolB
Outer membrane lipoprotein LolB; Plays a critical role in the incorporation of lipoproteins in the outer membrane after they are released by the LolA protein.
  
 
 
 0.907
KPA91642.1
ABC-type antimicrobial peptide transport system, ATPase component; PFAM: ABC transporter.
   
 
 0.879
KPA90143.1
ABC-type antimicrobial peptide transport system, ATPase component; PFAM: ABC transporter.
   
 
 0.879
KPA90144.1
ABC-type transport system, involved in lipoprotein release, permease component; PFAM: MacB-like periplasmic core domain; FtsX-like permease family.
   
 
 0.869
KPA91068.1
PFAM: MgsA AAA+ ATPase C terminal; ATPase family associated with various cellular activities (AAA).
  
    0.824
serS
seryl-tRNA synthetase; Catalyzes the attachment of serine to tRNA(Ser). Is also able to aminoacylate tRNA(Sec) with serine, to form the misacylated tRNA L- seryl-tRNA(Sec), which will be further converted into selenocysteinyl- tRNA(Sec).
  
    0.819
KPA92866.1
Hypothetical protein; PFAM: Domain of unknown function (DUF4398).
    
 
 0.817
Your Current Organism:
Pseudomonas fuscovaginae
NCBI taxonomy Id: 50340
Other names: CCUG 32780, CFBP 2065, CIP 106695, DSM 7231, ICMP 5940, LMG 2158, LMG:2158, NCPPB 3085, P. fuscovaginae, PDDCC 5940, PDDCC:5940, Pseudomonas fuscivaginae, strain 6801
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