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STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
KPA90412.1PFAM: Penicillin amidase. (775 aa)    
Predicted Functional Partners:
KPA90510.1
Non-ribosomal peptide synthase/amino acid adenylation enzyme; PFAM: HxxPF-repeated domain; Phosphopantetheine attachment site; Condensation domain; AMP-binding enzyme; AMP-binding enzyme C-terminal domain; TIGRFAM: amino acid adenylation domain; non-ribosomal peptide synthase domain TIGR01720.
 
  
 0.836
KPA90485.1
Hypothetical protein; PFAM: Sulfatase-modifying factor enzyme 1.
   
  
 0.801
KPA90316.1
Lysine/ornithine N-monooxygenase; PFAM: L-lysine 6-monooxygenase (NADPH-requiring).
 
  
 0.728
KPA90332.1
PFAM: MbtH-like protein.
 
    0.711
KPA89293.1
Lysine/ornithine N-monooxygenase; PFAM: L-lysine 6-monooxygenase (NADPH-requiring).
 
  
 0.708
KPA90502.1
PFAM: MbtH-like protein.
 
    0.703
KPA91711.1
PFAM: MbtH-like protein.
 
    0.702
KPA90484.1
Selenocysteine lyase; PFAM: Aminotransferase class-V.
  
  
 0.689
KPA90483.1
Zn-dependent dipeptidase, microsomal dipeptidase; PFAM: Membrane dipeptidase (Peptidase family M19).
 
  
 0.687
KPA93131.1
Selenocysteine lyase; PFAM: Aminotransferase class-V.
   
  
 0.647
Your Current Organism:
Pseudomonas fuscovaginae
NCBI taxonomy Id: 50340
Other names: CCUG 32780, CFBP 2065, CIP 106695, DSM 7231, ICMP 5940, LMG 2158, LMG:2158, NCPPB 3085, P. fuscovaginae, PDDCC 5940, PDDCC:5940, Pseudomonas fuscivaginae, strain 6801
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