STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
KPA90683.1Hypothetical protein; PFAM: Domain of unknown function (DUF4398). (118 aa)    
Predicted Functional Partners:
KPA90682.1
Outer membrane protein/peptidoglycan-associated (lipo)protein; PFAM: Domain of unknown function (DUF4398); OmpA family.
 
     0.876
KPA90684.1
'PFAM: Bacterial extracellular solute-binding proteins, family 3'.
 
     0.834
KPA92499.1
Putative LmbE-like protein; PFAM: GlcNAc-PI de-N-acetylase.
  
     0.763
KPA93337.1
Parallel beta-helix repeat (two copies); PFAM: Periplasmic copper-binding protein (NosD); TIGRFAM: parallel beta-helix repeat (two copies).
  
     0.757
KPA93335.1
PFAM: Sel1 repeat.
  
     0.756
KPA90941.1
Hypothetical protein.
  
     0.751
KPA87211.1
PFAM: Arc-like DNA binding domain.
  
     0.744
KPA92526.1
PFAM: Protein of unknown function (DUF330).
  
     0.737
KPA93338.1
Hypothetical protein.
  
     0.726
KPA90866.1
Hypothetical protein; PFAM: CHAD domain.
  
     0.721
Your Current Organism:
Pseudomonas fuscovaginae
NCBI taxonomy Id: 50340
Other names: CCUG 32780, CFBP 2065, CIP 106695, DSM 7231, ICMP 5940, LMG 2158, LMG:2158, NCPPB 3085, P. fuscovaginae, PDDCC 5940, PDDCC:5940, Pseudomonas fuscivaginae, strain 6801
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.