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STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
KPA90301.1PFAM: Cupin-like domain. (334 aa)    
Predicted Functional Partners:
rplP
LSU ribosomal protein L16P; Binds 23S rRNA and is also seen to make contacts with the A and possibly P site tRNAs; Belongs to the universal ribosomal protein uL16 family.
    
 
 0.863
KPA90302.1
Protein of unknown function (DUF894); PFAM: Transmembrane secretion effector.
       0.773
KPA90318.1
PFAM: Cupin-like domain.
  
     0.772
KPA89261.1
PFAM: Cupin-like domain.
  
     0.754
KPA90303.1
Aspartyl/asparaginyl beta-hydroxylase-like dioxygenase; PFAM: Aspartyl/Asparaginyl beta-hydroxylase.
     
 0.504
idi
Isopentenyl-diphosphate delta-isomerase; Catalyzes the 1,3-allylic rearrangement of the homoallylic substrate isopentenyl (IPP) to its highly electrophilic allylic isomer, dimethylallyl diphosphate (DMAPP).
 
     0.495
KPA90300.1
Amino acid adenylation enzyme/thioester reductase family protein; PFAM: Thioesterase domain; HxxPF-repeated domain; Phosphopantetheine attachment site; AMP-binding enzyme; Condensation domain; AMP-binding enzyme C-terminal domain; TIGRFAM: amino acid adenylation domain.
       0.486
KPA90880.1
Ca2+-binding protein (EF-Hand superfamily); PFAM: EF hand; EF-hand domain pair.
  
     0.462
argS
arginyl-tRNA synthetase; PFAM: DALR anticodon binding domain; Arginyl tRNA synthetase N terminal domain; tRNA synthetases class I (R); TIGRFAM: arginyl-tRNA synthetase.
   
    0.434
KPA91603.1
PFAM: Leucine Rich repeat.
  
     0.410
Your Current Organism:
Pseudomonas fuscovaginae
NCBI taxonomy Id: 50340
Other names: CCUG 32780, CFBP 2065, CIP 106695, DSM 7231, ICMP 5940, LMG 2158, LMG:2158, NCPPB 3085, P. fuscovaginae, PDDCC 5940, PDDCC:5940, Pseudomonas fuscivaginae, strain 6801
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