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STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
KPA90010.1DNA-binding domain-containing protein, AraC-type; PFAM: Helix-turn-helix domain; AraC-like ligand binding domain. (243 aa)    
Predicted Functional Partners:
KPA91233.1
DNA-binding domain-containing protein, AraC-type; PFAM: Helix-turn-helix domain; AraC-like ligand binding domain.
 
0.810
KPA89014.1
Chorismate mutase; PFAM: Prephenate dehydratase; ACT domain; Chorismate mutase type II; 'TIGRFAM: chorismate mutase domain of proteobacterial P-protein, clade 2'.
  
 
 0.787
KPA88652.1
PFAM: Flagellar basal body rod FlgEFG protein C-terminal; Flagella basal body rod protein; 'TIGRFAM: flagellar hook-basal body protein; flagellar basal-body rod protein FlgG, Gram-negative bacteria'; Belongs to the flagella basal body rod proteins family.
    
   0.784
KPA88247.1
PFAM: Response regulator receiver domain.
   
  0.775
rpoS
RNA polymerase, sigma 38 subunit, RpoS; Sigma factors are initiation factors that promote the attachment of RNA polymerase to specific initiation sites and are then released. This sigma factor is the master transcriptional regulator of the stationary phase and the general stress response.
   
 
 0.759
rpoH
Alternative sigma factor RpoH; Sigma factors are initiation factors that promote the attachment of RNA polymerase to specific initiation sites and are then released. This sigma factor is involved in regulation of expression of heat shock genes.
   
 
 0.759
rpoD
RNA polymerase sigma factor RpoD, C-terminal domain; Sigma factors are initiation factors that promote the attachment of RNA polymerase to specific initiation sites and are then released. This sigma factor is the primary sigma factor during exponential growth.
   
 
 0.759
KPA92430.1
Glutamate synthase (NADPH) large subunit; PFAM: Conserved region in glutamate synthase; GXGXG motif; Glutamate synthase central domain; Glutamine amidotransferases class-II.
    
  0.758
rpoA
DNA-directed RNA polymerase subunit alpha; DNA-dependent RNA polymerase catalyzes the transcription of DNA into RNA using the four ribonucleoside triphosphates as substrates.
    
 
 0.718
KPA93401.1
Phosphotransacetylase; Involved in acetate metabolism. In the N-terminal section; belongs to the CobB/CobQ family.
    
 0.694
Your Current Organism:
Pseudomonas fuscovaginae
NCBI taxonomy Id: 50340
Other names: CCUG 32780, CFBP 2065, CIP 106695, DSM 7231, ICMP 5940, LMG 2158, LMG:2158, NCPPB 3085, P. fuscovaginae, PDDCC 5940, PDDCC:5940, Pseudomonas fuscivaginae, strain 6801
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