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STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
KPA88766.1PFAM: ATPase family associated with various cellular activities (AAA). (319 aa)    
Predicted Functional Partners:
KPA88769.1
PFAM: von Willebrand factor type A domain.
 
 
 0.967
KPA88767.1
PFAM: Protein of unknown function DUF58.
 
  
 0.966
KPA88770.1
Tetratricopeptide repeat protein; PFAM: von Willebrand factor type A domain; Tetratricopeptide repeat.
 
   
 0.938
KPA88771.1
PFAM: Oxygen tolerance.
 
  
 0.913
KPA88768.1
Hypothetical protein; PFAM: Domain of unknown function (DUF4381).
 
 
 0.892
KPA88486.1
PFAM: Protein of unknown function DUF58.
 
  
 0.806
KPA90439.1
'PFAM: Orn/Lys/Arg decarboxylase, C-terminal domain; Orn/Lys/Arg decarboxylase, major domain; Orn/Lys/Arg decarboxylase, N-terminal domain'.
   
 
 0.769
KPA88888.1
'PFAM: Orn/Lys/Arg decarboxylase, C-terminal domain; Orn/Lys/Arg decarboxylase, major domain; Orn/Lys/Arg decarboxylase, N-terminal domain'.
   
 
 0.769
KPA91934.1
PFAM: CobN/Magnesium Chelatase; 'TIGRFAM: cobaltochelatase, CobN subunit'.
     
 0.549
cobB-3
Hydrogenobyrinic acid a,c-diamide synthase (glutamine-hydrolysing) /cobyrinate a,c-diamide synthase; Catalyzes the ATP-dependent amidation of the two carboxylate groups at positions a and c of hydrogenobyrinate, using either L- glutamine or ammonia as the nitrogen source; Belongs to the CobB/CbiA family.
     
 0.522
Your Current Organism:
Pseudomonas fuscovaginae
NCBI taxonomy Id: 50340
Other names: CCUG 32780, CFBP 2065, CIP 106695, DSM 7231, ICMP 5940, LMG 2158, LMG:2158, NCPPB 3085, P. fuscovaginae, PDDCC 5940, PDDCC:5940, Pseudomonas fuscivaginae, strain 6801
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