Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
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[Homology]
Score
KPA88766.1PFAM: ATPase family associated with various cellular activities (AAA). (319 aa)    
Predicted Functional Partners:
KPA88767.1
PFAM: Protein of unknown function DUF58.
 
  
 0.968
KPA88769.1
PFAM: von Willebrand factor type A domain.
 
  
 0.953
KPA88770.1
Tetratricopeptide repeat protein; PFAM: von Willebrand factor type A domain; Tetratricopeptide repeat.
 
   
 0.942
KPA88771.1
PFAM: Oxygen tolerance.
 
  
 0.920
KPA88768.1
Hypothetical protein; PFAM: Domain of unknown function (DUF4381).
 
  
 0.853
KPA88486.1
PFAM: Protein of unknown function DUF58.
 
  
 0.826
KPA90439.1
'PFAM: Orn/Lys/Arg decarboxylase, C-terminal domain; Orn/Lys/Arg decarboxylase, major domain; Orn/Lys/Arg decarboxylase, N-terminal domain'.
   
 
 0.636
KPA88888.1
'PFAM: Orn/Lys/Arg decarboxylase, C-terminal domain; Orn/Lys/Arg decarboxylase, major domain; Orn/Lys/Arg decarboxylase, N-terminal domain'.
   
 
 0.636
sbcD
Exodeoxyribonuclease I subunit D; SbcCD cleaves DNA hairpin structures. These structures can inhibit DNA replication and are intermediates in certain DNA recombination reactions. The complex acts as a 3'->5' double strand exonuclease that can open hairpins. It also has a 5' single-strand endonuclease activity; Belongs to the SbcD family.
  
    0.561
KPA88773.1
ATPase involved in DNA repair; 'PFAM: AAA domain; Putative exonuclease SbcCD, C subunit'; TIGRFAM: exonuclease SbcC.
       0.554
Your Current Organism:
Pseudomonas fuscovaginae
NCBI taxonomy Id: 50340
Other names: CCUG 32780, CFBP 2065, CIP 106695, DSM 7231, ICMP 5940, LMG 2158, LMG:2158, NCPPB 3085, P. fuscovaginae, PDDCC 5940, PDDCC:5940, Pseudomonas fuscivaginae, strain 6801
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