STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
KPA88780.1Putative photosystem II stability/assembly factor-like protein; PFAM: Photosynthesis system II assembly factor YCF48. (350 aa)    
Predicted Functional Partners:
KPA88779.1
Putative RND superfamily exporter; PFAM: MMPL family.
 
  
 0.974
KPA89278.1
Putative RND superfamily exporter; PFAM: MMPL family.
 
  
 0.892
KPA93378.1
PFAM: Protein of unknown function (DUF1329).
 
  
 0.866
KPA89276.1
PFAM: Protein of unknown function (DUF1329).
 
  
 0.866
KPA88314.1
PFAM: Protein of unknown function (DUF1329).
 
  
 0.866
KPA93379.1
PFAM: Protein of unknown function (DUF1302).
 
    0.858
KPA88313.1
PFAM: Protein of unknown function (DUF1302).
 
    0.858
KPA89275.1
PFAM: Protein of unknown function (DUF1302).
 
    0.851
KPA89012.1
PFAM: Prephenate dehydrogenase.
     
 0.738
KPA92120.1
Putative RND superfamily exporter; PFAM: MMPL family.
 
  
 0.650
Your Current Organism:
Pseudomonas fuscovaginae
NCBI taxonomy Id: 50340
Other names: CCUG 32780, CFBP 2065, CIP 106695, DSM 7231, ICMP 5940, LMG 2158, LMG:2158, NCPPB 3085, P. fuscovaginae, PDDCC 5940, PDDCC:5940, Pseudomonas fuscivaginae, strain 6801
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.