STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
KPA88816.1Transcriptional regulator, LysR family; 'PFAM: LysR substrate binding domain; Bacterial regulatory helix-turn-helix protein, lysR family'; Belongs to the LysR transcriptional regulatory family. (296 aa)    
Predicted Functional Partners:
KPA88817.1
Diguanylate cyclase/phosphodiesterase with PAS/PAC sensor(s); PFAM: EAL domain; GGDEF domain; PAS domain; PAS fold; TIGRFAM: PAS domain S-box; diguanylate cyclase (GGDEF) domain.
       0.622
KPA88615.1
Transcriptional regulator, LysR family; 'PFAM: LysR substrate binding domain; Bacterial regulatory helix-turn-helix protein, lysR family'; Belongs to the LysR transcriptional regulatory family.
  
     0.598
leuC
3-isopropylmalate dehydratase, large subunit; Catalyzes the isomerization between 2-isopropylmalate and 3- isopropylmalate, via the formation of 2-isopropylmaleate.
  
    0.575
leuD
3-isopropylmalate dehydratase, small subunit; Catalyzes the isomerization between 2-isopropylmalate and 3- isopropylmalate, via the formation of 2-isopropylmaleate. Belongs to the LeuD family. LeuD type 1 subfamily.
  
    0.570
KPA92669.1
Transcriptional regulator; 'PFAM: LysR substrate binding domain; Bacterial regulatory helix-turn-helix protein, lysR family'; Belongs to the LysR transcriptional regulatory family.
  
     0.527
KPA87937.1
Transcriptional regulator, LysR family; 'PFAM: LysR substrate binding domain; Bacterial regulatory helix-turn-helix protein, lysR family'; Belongs to the LysR transcriptional regulatory family.
  
     0.520
KPA88598.1
Transcriptional regulator, LysR family; 'PFAM: LysR substrate binding domain; Bacterial regulatory helix-turn-helix protein, lysR family'; Belongs to the LysR transcriptional regulatory family.
  
     0.514
KPA89354.1
Transcriptional regulator; 'PFAM: LysR substrate binding domain; Bacterial regulatory helix-turn-helix protein, lysR family'; Belongs to the LysR transcriptional regulatory family.
  
     0.505
KPA88751.1
Anti-anti-sigma regulatory factor (antagonist of anti-sigma factor); TIGRFAM: anti-anti-sigma factor.
  
     0.456
KPA88813.1
Methylase involved in ubiquinone/menaquinone biosynthesis; PFAM: Methyltransferase domain.
  
    0.415
Your Current Organism:
Pseudomonas fuscovaginae
NCBI taxonomy Id: 50340
Other names: CCUG 32780, CFBP 2065, CIP 106695, DSM 7231, ICMP 5940, LMG 2158, LMG:2158, NCPPB 3085, P. fuscovaginae, PDDCC 5940, PDDCC:5940, Pseudomonas fuscivaginae, strain 6801
Server load: low (24%) [HD]
STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.