STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
KPA88914.1tRNA-(MS[2]IO[6]A)-hydroxylase (MiaE); PFAM: hydroxylase for synthesis of 2-methylthio-cis-ribozeatin in tRNA. (201 aa)    
Predicted Functional Partners:
KPA88783.1
PFAM: Protein of unknown function (DUF1315).
  
     0.707
KPA90912.1
PFAM: Succinate dehydrogenase/Fumarate reductase transmembrane subunit; 'TIGRFAM: succinate dehydrogenase, cytochrome b556 subunit'.
  
     0.698
KPA90911.1
Succinate dehydrogenase, hydrophobic membrane anchor protein; Membrane-anchoring subunit of succinate dehydrogenase (SDH).
  
     0.648
KPA88751.1
Anti-anti-sigma regulatory factor (antagonist of anti-sigma factor); TIGRFAM: anti-anti-sigma factor.
  
     0.612
KPA89735.1
PFAM: putative metal-binding protein (DUF2387); TIGRFAM: conserved hypothetical metal-binding protein.
  
     0.565
KPA88915.1
PFAM: Universal stress protein family.
       0.537
KPA90888.1
Phosphohistidine phosphatase, SixA; PFAM: Histidine phosphatase superfamily (branch 1); TIGRFAM: phosphohistidine phosphatase SixA.
  
     0.529
KPA92767.1
Hypothetical protein; PFAM: Flavinator of succinate dehydrogenase.
  
     0.511
nfuA
IscR-regulated protein YhgI; Involved in iron-sulfur cluster biogenesis. Binds a 4Fe-4S cluster, can transfer this cluster to apoproteins, and thereby intervenes in the maturation of Fe/S proteins. Could also act as a scaffold/chaperone for damaged Fe/S proteins.
  
     0.509
KPA89792.1
F0F1-type ATP synthase, subunit I; PFAM: ATP synthase I chain.
  
     0.497
Your Current Organism:
Pseudomonas fuscovaginae
NCBI taxonomy Id: 50340
Other names: CCUG 32780, CFBP 2065, CIP 106695, DSM 7231, ICMP 5940, LMG 2158, LMG:2158, NCPPB 3085, P. fuscovaginae, PDDCC 5940, PDDCC:5940, Pseudomonas fuscivaginae, strain 6801
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